Variant report

Variant	nsv596417
Chromosome Location	chr4:187262489-187529904
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1927)
CpG islands
(count:4827)
Chromatin interactive
region (count:85)
LncRNA
region (count:22)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1927 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:187508528-187509011	K562	blood:	n/a	n/a
2	ARID3A	chr4:187508653-187508797	HepG2	liver:	n/a	n/a
3	ARID3A	chr4:187393967-187394511	K562	blood:	n/a	n/a
4	ARID3A	chr4:187394041-187394370	HepG2	liver:	n/a	n/a
5	ATF1	chr4:187421894-187422344	K562	blood:	n/a	n/a
6	ATF1	chr4:187420491-187420916	K562	blood:	n/a	n/a
7	ATF1	chr4:187272198-187272476	K562	blood:	n/a	n/a
8	ATF3	chr4:187394371-187394479	GM12878	blood:	n/a	n/a
9	ATF3	chr4:187421950-187422165	K562	blood:	n/a	n/a
10	BACH1	chr4:187487248-187487849	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr4:187487400-187487517	K562	blood:	n/a	n/a
12	BACH1	chr4:187476293-187476945	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr4:187459112-187459482	K562	blood:	n/a	n/a
14	BACH1	chr4:187392859-187392959	K562	blood:	n/a	n/a
15	BACH1	chr4:187356907-187357919	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr4:187467939-187468156	GM12878	blood:	n/a	n/a
17	BCL11A	chr4:187266370-187266656	H1-hESC	embryonic stem cell:	n/a	n/a
18	BCL11A	chr4:187354074-187354310	GM12878	blood:	n/a	n/a
19	BCL3	chr4:187327155-187327407	GM12878	blood:	n/a	n/a
20	BHLHE40	chr4:187475701-187476008	K562	blood:	n/a	n/a
21	BHLHE40	chr4:187458935-187459776	K562	blood:	n/a	n/a
22	BHLHE40	chr4:187491598-187491621	K562	blood:	n/a	n/a
23	BHLHE40	chr4:187475724-187475895	HepG2	liver:	n/a	n/a
24	BHLHE40	chr4:187442068-187442244	K562	blood:	n/a	n/a
25	BHLHE40	chr4:187362735-187362783	K562	blood:	n/a	n/a
26	BHLHE40	chr4:187422808-187423008	K562	blood:	n/a	n/a
27	BHLHE40	chr4:187421756-187422525	K562	blood:	n/a	n/a
28	BRCA1	chr4:187346073-187346283	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr4:187511473-187511598	Hela-S3	cervix:	n/a	n/a
30	BRCA1	chr4:187520434-187520442	HepG2	liver:	n/a	n/a
31	BRCA1	chr4:187475689-187475898	H1-hESC	embryonic stem cell:	n/a	n/a
32	CBX3	chr4:187285262-187285641	K562	blood:	n/a	n/a
33	CBX3	chr4:187284185-187284627	K562	blood:	n/a	n/a
34	CBX3	chr4:187354461-187354780	K562	blood:	n/a	n/a
35	CBX3	chr4:187503228-187503597	K562	blood:	n/a	n/a
36	CBX3	chr4:187373146-187373490	K562	blood:	n/a	n/a
37	CBX3	chr4:187373086-187373652	HCT-116	colon:	n/a	n/a
38	CBX3	chr4:187373072-187373601	HCT-116	colon:	n/a	n/a
39	CBX3	chr4:187458876-187459841	K562	blood:	n/a	n/a
40	CBX3	chr4:187411097-187411357	K562	blood:	n/a	n/a
41	CBX3	chr4:187457484-187457861	K562	blood:	n/a	n/a
42	CBX3	chr4:187503291-187503563	K562	blood:	n/a	n/a
43	CBX3	chr4:187459280-187459848	K562	blood:	n/a	n/a
44	CBX3	chr4:187421712-187422622	K562	blood:	n/a	n/a
45	CBX3	chr4:187373144-187373570	K562	blood:	n/a	n/a
46	CBX3	chr4:187421797-187422410	K562	blood:	n/a	n/a
47	CBX3	chr4:187285282-187285592	K562	blood:	n/a	n/a
48	CCNT2	chr4:187421964-187422263	K562	blood:	n/a	n/a
49	CCNT2	chr4:187362847-187363236	K562	blood:	n/a	n/a
50	CCNT2	chr4:187459142-187459761	K562	blood:	n/a	n/a

(count:4827 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:187521418-187521468	Hela-S3	cervix:	n/a
2	chr4:187521418-187521468	AG09319	gingival:	n/a
3	chr4:187349131-187349181	NHBE	bronchial:	n/a
4	chr4:187349714-187349764	SK-N-SH	brain:	n/a
5	chr4:187426127-187426177	HRCEpiC	kidney:	n/a
6	chr4:187293592-187293642	NH-A	brain:	n/a
7	chr4:187524814-187524864	HUVEC	blood vessel:	n/a
8	chr4:187293114-187293164	HPAEpiC	pulmonary alveolar:	n/a
9	chr4:187521418-187521468	Hela-S3	cervix:	n/a
10	chr4:187521418-187521468	AG09319	gingival:	n/a
11	chr4:187349131-187349181	NHBE	bronchial:	n/a
12	chr4:187349714-187349764	SK-N-SH	brain:	n/a
13	chr4:187426127-187426177	HRCEpiC	kidney:	n/a
14	chr4:187293592-187293642	NH-A	brain:	n/a
15	chr4:187524814-187524864	HUVEC	blood vessel:	n/a
16	chr4:187293114-187293164	HPAEpiC	pulmonary alveolar:	n/a
17	chr4:187422119-187422169	SKMC	muscle:	n/a
18	chr4:187475891-187475941	Jurkat	blood:	n/a
19	chr4:187459476-187459526	AG04450	lung:	fetal
20	chr4:187459415-187459465	BJ	skin:	n/a
21	chr4:187517794-187517844	AG09319	gingival:	n/a
22	chr4:187475669-187475719	HRE	kidney:	n/a
23	chr4:187293418-187293468	SK-N-SH_RA	brain:	n/a
24	chr4:187360860-187360910	Hela-S3	cervix:	n/a
25	chr4:187510183-187510233	HMEC	breast:	n/a
26	chr4:187476455-187476505	HIPEpiC	eye:	n/a
27	chr4:187518024-187518074	AG09319	gingival:	n/a
28	chr4:187475841-187475891	HAEpiC	amniotic membrane:	n/a
29	chr4:187404958-187405008	CMK	blood:	n/a
30	chr4:187404988-187405038	NT2-D1	testis:	n/a
31	chr4:187476455-187476505	PANC-1	pancreas:	n/a
32	chr4:187407036-187407086	AG04450	lung:	fetal
33	chr4:187476326-187476376	MCF10A-Er-Src	breast:	n/a
34	chr4:187455559-187455609	CMK	blood:	n/a
35	chr4:187475841-187475891	K562	blood:	n/a
36	chr4:187349714-187349764	Hepatocyte	liver:	n/a
37	chr4:187517939-187517989	PFSK-1	brain:	n/a
38	chr4:187349714-187349764	PrEC	prostate:	n/a
39	chr4:187476543-187476593	AG09309	skin:	n/a
40	chr4:187476326-187476376	AG09319	gingival:	n/a
41	chr4:187517847-187517897	AG09309	skin:	n/a
42	chr4:187455304-187455354	ECC-1	luminal epithelium:	n/a
43	chr4:187459476-187459526	HNPCEpiC	eye:	n/a
44	chr4:187422091-187422141	T-47D	breast:	n/a
45	chr4:187404958-187405008	NHBE	bronchial:	n/a
46	chr4:187349131-187349181	SAEC	small airway:	n/a
47	chr4:187404988-187405038	HCF	heart:	n/a
48	chr4:187459415-187459465	HMEC	breast:	n/a
49	chr4:187455853-187455903	LNCaP	prostate:	n/a
50	chr4:187476569-187476619	NHDF-neo	bronchial:	n/a

(count:85 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:187458073..187459669-chr4:187489557..187491261,2	K562	blood:
2	chr17:41464198..41466205-chr4:187449246..187450766,2	MCF-7	breast:
3	chr4:187420835..187422454-chr4:187508241..187510216,2	K562	blood:
4	chr4:187424618..187426617-chr4:187440828..187442815,2	MCF-7	breast:
5	chr4:187394722..187395443-chr4:187508309..187509281,2	MCF-7	breast:
6	chr4:187365176..187367106-chr4:187368874..187370492,2	K562	blood:
7	chr4:187458318..187460106-chr4:187464822..187466767,2	K562	blood:
8	chr4:187339945..187342685-chr4:187344135..187346623,2	K562	blood:
9	chr4:187463972..187466236-chr4:187470397..187471997,2	K562	blood:
10	chr4:187477233..187480575-chr4:187481254..187484237,4	K562	blood:
11	chr4:187425444..187427113-chr4:187432314..187434673,2	K562	blood:
12	chr4:187447764..187449411-chr4:187453319..187455061,2	K562	blood:
13	chr4:187121686..187123375-chr4:187456206..187458817,2	K562	blood:
14	chr4:187363385..187366676-chr4:187368218..187370374,3	K562	blood:
15	chr4:187458073..187459669-chr4:187489557..187491261,2	K562	blood:
16	chr4:187327492..187329160-chr4:187332412..187335274,2	K562	blood:
17	chr4:187363286..187364885-chr4:187368218..187369820,2	K562	blood:
18	chr4:187424618..187426617-chr4:187440828..187442815,2	MCF-7	breast:
19	chr4:187477233..187480575-chr4:187481254..187484237,4	K562	blood:
20	chr4:187418143..187425298-chr4:187427395..187434877,12	K562	blood:
21	chr4:187367777..187369317-chr4:187372463..187374481,2	MCF-7	breast:
22	chr4:187468016..187470329-chr4:187475852..187477420,2	MCF-7	breast:
23	chr4:187394154..187394722-chr4:187508267..187509221,2	K562	blood:
24	chr4:187367777..187369317-chr4:187372463..187374481,2	MCF-7	breast:
25	chr4:187487952..187490198-chr4:187492658..187494283,2	K562	blood:
26	chr4:187394154..187394722-chr4:187508267..187509221,2	K562	blood:
27	chr4:187500880..187503976-chr4:187505788..187508799,3	K562	blood:
28	chr4:187500135..187502809-chr4:187503552..187505975,2	MCF-7	breast:
29	chr4:187378015..187379794-chr4:187381538..187383252,2	K562	blood:
30	chr4:187250299..187252105-chr4:187259927..187262894,2	K562	blood:
31	chr4:187363385..187366676-chr4:187368218..187370374,3	K562	blood:
32	chr4:187454593..187456201-chr4:187457410..187459187,2	K562	blood:
33	chr4:187393785..187394637-chr4:187475328..187475950,2	MCF-7	breast:
34	chr4:187421353..187422936-chr4:187501423..187503458,2	K562	blood:
35	chr4:187332246..187335061-chr4:187336434..187338116,2	K562	blood:
36	chr4:187449413..187452478-chr4:187454571..187457368,4	K562	blood:
37	chr4:187332850..187335061-chr4:187335595..187338116,3	K562	blood:
38	chr4:187500135..187502809-chr4:187503552..187505975,2	MCF-7	breast:
39	chr4:187393785..187394637-chr4:187475328..187475950,2	MCF-7	breast:
40	chr4:187400808..187402522-chr4:187420720..187422452,2	MCF-7	breast:
41	chr4:187217859..187218927-chr4:187508295..187509239,10	K562	blood:
42	chr4:187394722..187395443-chr4:187508309..187509281,2	MCF-7	breast:
43	chr4:187419835..187422222-chr4:187436024..187437802,2	K562	blood:
44	chr4:187458318..187460106-chr4:187464822..187466767,2	K562	blood:
45	chr4:187450978..187452522-chr4:187454014..187456071,2	K562	blood:
46	chr4:187425444..187427113-chr4:187432314..187434673,2	K562	blood:
47	chr4:187450978..187452522-chr4:187454014..187456071,2	K562	blood:
48	chr11:67069270..67069773-chr4:187272896..187273396,2	NB4	blood:
49	chr4:187516733..187519515-chr4:187519671..187523118,3	K562	blood:
50	chr4:187336442..187338955-chr4:187341117..187342706,2	K562	blood:

(count:22 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTNR1A-1	chr4:187349859-187350004	ENSG00000251165.1
2	lnc-MTNR1A-1	chr4:187345244-187345390	NONHSAT099658
3	lnc-MTNR1A-1	chr4:187352772-187352922	ENSG00000251165.1
4	lnc-MTNR1A-1	chr4:187344882-187344986	ENSG00000251165.1
5	lnc-MTNR1A-1	chr4:187337280-187337490	NONHSAT099658
6	lnc-MTNR1A-1	chr4:187347391-187347447	ENSG00000251165.1
7	lnc-MTNR1A-1	chr4:187421999-187422151	ENSG00000251165.1
8	lnc-MTNR1A-1	chr4:187421999-187422151	ENSG00000251165.1
9	lnc-MTNR1A-1	chr4:187344883-187344986	NONHSAT099658
10	lnc-MTNR1A-1	chr4:187345244-187345390	ENSG00000251165.1
11	lnc-MTNR1A-1	chr4:187421999-187422212	NONHSAT099658
12	lnc-MTNR1A-1	chr4:187352772-187352922	NONHSAT099658
13	lnc-MTNR1A-1	chr4:187353299-187353392	NONHSAT099658
14	lnc-MTNR1A-1	chr4:187347391-187348252	ENSG00000251165.1
15	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1
16	lnc-MTNR1A-1	chr4:187347391-187348252	NONHSAT099658
17	lnc-MTNR1A-1	chr4:187348128-187348252	ENSG00000251165.1
18	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1
19	lnc-F11-8	chr4:187500098-187503339	NONHSAT099666
20	lnc-FAT1-5	chr4:187409184-187409778	predAs_chen_AV690772_1
21	lnc-MTNR1A-1	chr4:187352772-187352922	ENSG00000251165.1
22	lnc-MTNR1A-1	chr4:187344882-187344986	ENSG00000251165.1

No data

Variant related genes	Relation type
F11-AS1	TF binding region
RNU6-1055P	TF binding region
ENSG00000272297	TF binding region
FAT1	TF binding region
MTNR1A	TF binding region
F11-AS1	CpG island
RNU6-1055P	CpG island
ENSG00000272297	CpG island
FAT1	CpG island
MTNR1A	CpG island
ENSG00000168412	chromatin interactions
ENSG00000212387	chromatin interactions
ENSG00000213332	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000272297	chromatin interactions
ENSG00000251165	chromatin interactions
ENSG00000083857	chromatin interactions

Extended variants
information (count: 9634 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:9634 , 50 per page) page: 1 2 3 4 5 6 7 ... 193

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10032695	chr4:187262489-187262490	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562921336	chr4:187262506-187262507	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs141850721	chr4:187262507-187262508	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs58321536	chr4:187262602-187262603	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs59116022	chr4:187262643-187262644	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs376517580	chr4:187262648-187262649	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs528685187	chr4:187262675-187262676	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs115273876	chr4:187262728-187262729	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs117923488	chr4:187262747-187262748	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
10	rs532805789	chr4:187262799-187262800	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs150602785	chr4:187262821-187262822	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs34606402	chr4:187262833-187262834	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs139784813	chr4:187262851-187262852	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs114510949	chr4:187263225-187263226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs556578931	chr4:187263312-187263313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs149376427	chr4:187263356-187263357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs567172987	chr4:187263436-187263437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs537724178	chr4:187263437-187263438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573420834	chr4:187263478-187263479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs183054729	chr4:187263479-187263480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs565324778	chr4:187263509-187263510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs13102850	chr4:187263515-187263516	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs187729051	chr4:187263518-187263519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs146251361	chr4:187263565-187263566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs4861710	chr4:187263675-187263676	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs530126764	chr4:187263676-187263677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12645838	chr4:187263711-187263712	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs565986618	chr4:187263749-187263750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554190781	chr4:187263793-187263794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs572457005	chr4:187263871-187263872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs78134251	chr4:187263919-187263920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs551585962	chr4:187263958-187263959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs571344302	chr4:187263989-187263990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs536794837	chr4:187263997-187263998	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs144079574	chr4:187264049-187264050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs555197786	chr4:187264084-187264085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574090435	chr4:187264129-187264130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs76399589	chr4:187264137-187264138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs35844503	chr4:187264141-187264142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs535857789	chr4:187264170-187264171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs116024907	chr4:187264183-187264184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs573518324	chr4:187264187-187264188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs576745722	chr4:187264188-187264189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs542329017	chr4:187264219-187264220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs35258568	chr4:187264230-187264231	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs80251884	chr4:187264252-187264253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs34827502	chr4:187264264-187264265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs192308529	chr4:187264290-187264291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs527918121	chr4:187264294-187264295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs544776759	chr4:187264348-187264349	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16774939	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	17053054	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Lung adenocarcinoma	17086460	CNVD
Facioscapulohumeral muscular dystrophy	21829175	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	20844748	CNVD
Autism	18414403	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Breast cancer	20409316	CNVD
Rhabdomyosarcoma	16790082	CNVD
Schizophrenia	21399695	CNVD
Developmental delay	22127048	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cervical cancer	21063398	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Ependymoma	20639864	CNVD
Prostate cancer	22341455	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
XY gonadal dysgenesis	20685758	CNVD

Chromatin state (count:1483 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187263200-187264000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:187264000-187264200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:187264000-187264400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:187265200-187265600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr4:187265800-187267000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:187266000-187266600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr4:187266200-187266400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr4:187266200-187266800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr4:187266200-187267000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr4:187266200-187267000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr4:187266600-187266800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr4:187266600-187266800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr4:187266600-187266800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
14	chr4:187266600-187266800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:187266600-187266800	Enhancers	Fetal Stomach	stomach
16	chr4:187266600-187267000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr4:187266600-187267000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr4:187266600-187267000	Enhancers	Duodenum Mucosa	Duodenum
19	chr4:187266600-187267000	Enhancers	Fetal Intestine Large	intestine
20	chr4:187266600-187267000	Enhancers	Fetal Intestine Small	intestine
21	chr4:187266800-187267000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr4:187266800-187267000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:187267800-187268000	Enhancers	Pancreas	Pancrea
24	chr4:187268000-187269000	Weak transcription	Pancreas	Pancrea
25	chr4:187268800-187269400	Enhancers	Fetal Kidney	kidney
26	chr4:187269000-187269400	Active TSS	Pancreas	Pancrea
27	chr4:187269200-187269400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr4:187269200-187269400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr4:187269200-187269800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:187269400-187270200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr4:187269400-187272400	Enhancers	Pancreas	Pancrea
32	chr4:187269600-187269800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr4:187269600-187269800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
34	chr4:187272400-187278800	Weak transcription	Pancreas	Pancrea
35	chr4:187273800-187274000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:187273800-187274000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr4:187278800-187279000	Enhancers	Pancreas	Pancrea
38	chr4:187285000-187285600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:187285000-187286200	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr4:187285000-187287800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:187285200-187286200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr4:187285200-187286200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr4:187285800-187286200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:187286200-187289200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:187289000-187289600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:187289000-187289600	Enhancers	HMEC	breast
47	chr4:187289200-187289800	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr4:187289200-187289800	Enhancers	NHEK	skin
49	chr4:187289200-187290200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:187289200-187290200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links