Variant report

Variant nsv600089
Chromosome Location chr5:152200109-152488891
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:287 , 50 per page) page: 1 2 3 4 5 6
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:152213000-152213200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:152213200-152218000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr5:152217800-152218600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
4 chr5:152218000-152218200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
5 chr5:152218000-152218400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr5:152218000-152218600 Active TSS Liver Liver
7 chr5:152218000-152218800 Enhancers Colon Smooth Muscle Colon
8 chr5:152231400-152232000 Enhancers Stomach Mucosa stomach
9 chr5:152232000-152235200 Weak transcription Stomach Mucosa stomach
10 chr5:152232800-152235200 Enhancers iPS-15b Cell Line embryonic stem cell
11 chr5:152233000-152233400 Enhancers H9 Cell Line embryonic stem cell
12 chr5:152233000-152233800 Enhancers ES-I3 Cell Line embryonic stem cell
13 chr5:152233000-152234600 Enhancers H1 Cell Line embryonic stem cell
14 chr5:152233000-152235400 Enhancers iPS-18 Cell Line embryonic stem cell
15 chr5:152233000-152236200 Enhancers iPS-20b Cell Line embryonic stem cell
16 chr5:152233200-152235600 Enhancers HUES6 Cell Line embryonic stem cell
17 chr5:152233200-152235800 Enhancers HUES64 Cell Line embryonic stem cell
18 chr5:152233400-152233800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr5:152233400-152235800 Enhancers HUES48 Cell Line embryonic stem cell
20 chr5:152233800-152234200 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr5:152234000-152236400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr5:152234200-152236000 Enhancers ES-I3 Cell Line embryonic stem cell
23 chr5:152234800-152235200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr5:152235200-152235800 Enhancers Stomach Mucosa stomach
25 chr5:152235800-152237000 Weak transcription Stomach Mucosa stomach
26 chr5:152236000-152237000 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr5:152236400-152236800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr5:152236800-152238400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr5:152237000-152237400 Enhancers Stomach Mucosa stomach
30 chr5:152237200-152237400 Enhancers ES-I3 Cell Line embryonic stem cell
31 chr5:152237200-152237400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr5:152237200-152237600 Enhancers Gastric stomach
33 chr5:152237400-152240400 Weak transcription Stomach Mucosa stomach
34 chr5:152237600-152238200 Weak transcription Gastric stomach
35 chr5:152238200-152238400 Enhancers Gastric stomach
36 chr5:152240000-152240600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr5:152240200-152240800 Enhancers Pancreatic Islets Pancreatic Islet
38 chr5:152240400-152241200 Enhancers Stomach Mucosa stomach
39 chr5:152241000-152241600 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr5:152243200-152245200 Enhancers HSMM muscle
41 chr5:152246000-152247400 Enhancers HUES48 Cell Line embryonic stem cell
42 chr5:152247200-152247400 Enhancers H1 Cell Line embryonic stem cell
43 chr5:152247400-152247800 Flanking Active TSS HUES48 Cell Line embryonic stem cell
44 chr5:152247400-152248400 Weak transcription H1 Cell Line embryonic stem cell
45 chr5:152248400-152248600 Enhancers H1 Cell Line embryonic stem cell
46 chr5:152253400-152253600 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
47 chr5:152253400-152253600 ZNF genes & repeats Gastric stomach
48 chr5:152261400-152262800 Enhancers Fetal Brain Male brain
49 chr5:152262000-152263200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
50 chr5:152262200-152264800 Enhancers Brain Germinal Matrix brain

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