Variant report

Variant	nsv602844
Chromosome Location	chr6:33935903-33942640
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33935283..33936415-chr6:33994982..33996031,6	MCF-7	breast:
2	chr6:33935012..33937459-chr6:33942472..33944353,2	K562	blood:
3	chr6:33935558..33936417-chr6:34023156..34023663,2	K562	blood:
4	chr6:33936123..33939292-chr6:33941917..33944139,3	MCF-7	breast:
5	chr6:33935782..33936335-chr6:33955656..33956622,2	MCF-7	breast:
6	chr6:33935012..33937286-chr6:33941317..33943972,2	K562	blood:
7	chr6:33928944..33932796-chr6:33933214..33936694,5	K562	blood:
8	chr6:33935012..33937459-chr6:33942472..33944353,2	K562	blood:
9	chr6:33936123..33939292-chr6:33941917..33944139,3	MCF-7	breast:
10	chr6:33819352..33820057-chr6:33935715..33936362,3	MCF-7	breast:
11	chr6:33934133..33938274-chr6:33943444..33948778,6	MCF-7	breast:
12	chr6:33935012..33937286-chr6:33941317..33943972,2	K562	blood:
13	chr6:33935685..33937732-chr6:33955927..33958373,2	MCF-7	breast:
14	chr6:33819661..33820304-chr6:33935521..33936307,2	MCF-7	breast:

No data

Extended variants
information (count: 232 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:232 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9469655	chr6:33935903-33935904	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs187197916	chr6:33935919-33935920	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs540789050	chr6:33935926-33935927	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189742701	chr6:33935952-33935953	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs529921197	chr6:33935975-33935976	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs570765262	chr6:33935986-33935987	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs548481148	chr6:33936009-33936010	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
8	rs556221135	chr6:33936070-33936071	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
9	rs35628510	chr6:33936071-33936072	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
10	rs73402454	chr6:33936082-33936083	Weak transcription Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs111269582	chr6:33936156-33936157	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
12	rs139836222	chr6:33936190-33936191	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
13	rs374573359	chr6:33936198-33936199	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
14	rs550295528	chr6:33936215-33936216	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
15	rs571728651	chr6:33936229-33936230	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
16	rs141553256	chr6:33936240-33936241	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
17	rs547981706	chr6:33936283-33936284	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
18	rs182358077	chr6:33936300-33936301	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
19	rs536527792	chr6:33936331-33936332	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
20	rs79471497	chr6:33936366-33936367	Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
21	rs185652232	chr6:33936439-33936440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374656416	chr6:33936477-33936478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575943288	chr6:33936507-33936508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190358805	chr6:33936525-33936526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183422064	chr6:33936531-33936532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs9380394	chr6:33936538-33936539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540752315	chr6:33936569-33936570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559250811	chr6:33936695-33936696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188825219	chr6:33936708-33936709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs568533771	chr6:33936714-33936715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs372426228	chr6:33936761-33936762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563649177	chr6:33936790-33936791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564780253	chr6:33936827-33936828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs550150768	chr6:33936856-33936857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565301730	chr6:33936857-33936858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532616358	chr6:33936917-33936918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs7755524	chr6:33936925-33936926	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs370608323	chr6:33936936-33936937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs566116919	chr6:33936937-33936938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542296386	chr6:33936981-33936982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs60799232	chr6:33937025-33937026	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs530713368	chr6:33937033-33937034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530815574	chr6:33937056-33937057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191621755	chr6:33937072-33937073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577140519	chr6:33937123-33937124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75794266	chr6:33937126-33937127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572775644	chr6:33937128-33937129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12110641	chr6:33937188-33937189	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs570131701	chr6:33937227-33937228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549687834	chr6:33937268-33937269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33927000-33942400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33934800-33943600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33935600-33936000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:33935600-33936400	Bivalent Enhancer	NHDF-Ad	bronchial
5	chr6:33935800-33936200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:33935800-33936200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:33941800-33942800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:33941800-33942800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:33941800-33942800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr6:33942000-33942200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:33942000-33942400	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:33942000-33942600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr6:33942000-33942800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:33942400-33942600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:33942400-33942800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr6:33942400-33942800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:33942400-33942800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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