Variant report

Variant	nsv603257
Chromosome Location	chr6:61900657-61938859
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:64125661..64126400-chr6:61912686..61913542,2	MCF-7	breast:
2	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:
3	chr1:121483338..121485429-chr6:61912530..61914360,3	MCF-7	breast:
4	chr6:58777707..58778511-chr6:61909313..61909813,2	MCF-7	breast:
5	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
6	chr6:58777671..58778345-chr6:61909292..61909815,4	MCF-7	breast:
7	chr6:58777651..58778267-chr6:61909313..61909813,3	MCF-7	breast:

Extended variants
information (count: 2942 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:2942 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7762587	chr6:61900657-61900658	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs551518827	chr6:61900663-61900664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141861126	chr6:61900667-61900668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146838332	chr6:61900669-61900670	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145428013	chr6:61900673-61900674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145894394	chr6:61900676-61900677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs566741558	chr6:61900682-61900683	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140034874	chr6:61900683-61900684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs139946848	chr6:61900685-61900686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147808618	chr6:61900687-61900688	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141771747	chr6:61900688-61900689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138181265	chr6:61900690-61900691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147545418	chr6:61900704-61900705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144988368	chr6:61900712-61900713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201545952	chr6:61900713-61900714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78541157	chr6:61900726-61900727	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs145616113	chr6:61900736-61900737	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs62413489	chr6:61900738-61900739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62413490	chr6:61900742-61900743	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62413491	chr6:61900748-61900749	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143255593	chr6:61900750-61900751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147344959	chr6:61900753-61900754	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs567783410	chr6:61900762-61900763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs368071692	chr6:61900765-61900766	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370385895	chr6:61900777-61900778	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs146727499	chr6:61900803-61900804	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs143285428	chr6:61900804-61900805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62413492	chr6:61900813-61900814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs62413493	chr6:61900819-61900820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs62413494	chr6:61900822-61900823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184552228	chr6:61900835-61900836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62413495	chr6:61900842-61900843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs62413496	chr6:61900846-61900847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs537840682	chr6:61900848-61900849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200046250	chr6:61900859-61900860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532711200	chr6:61900861-61900862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs139026318	chr6:61900866-61900867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139338006	chr6:61900875-61900876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs541770032	chr6:61900876-61900877	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145714648	chr6:61900877-61900878	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143390820	chr6:61900882-61900883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115709349	chr6:61900883-61900884	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539751635	chr6:61900885-61900886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139298343	chr6:61900887-61900888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs142229056	chr6:61900898-61900899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs150300007	chr6:61900901-61900902	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572974906	chr6:61900917-61900918	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs534019889	chr6:61900920-61900921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs552416707	chr6:61900925-61900926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374337317	chr6:61900926-61900927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61893800-61905800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:61894000-61901800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:61894800-61901800	Weak transcription	K562	blood
4	chr6:61896400-61902400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:61900200-61902800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:61900600-61901000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:61900600-61902400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr6:61900600-61905400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr6:61901000-61901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:61901000-61901800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:61901400-61902400	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr6:61901600-61902400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:61901600-61902600	ZNF genes & repeats	HepG2	liver
14	chr6:61901800-61902000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
15	chr6:61901800-61902000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr6:61901800-61902000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:61901800-61902000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr6:61901800-61902000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
19	chr6:61901800-61902000	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr6:61901800-61902000	ZNF genes & repeats	Fetal Lung	lung
21	chr6:61901800-61902000	ZNF genes & repeats	A549	lung
22	chr6:61901800-61902000	ZNF genes & repeats	HSMMtube	muscle
23	chr6:61901800-61902000	ZNF genes & repeats	NHDF-Ad	bronchial
24	chr6:61901800-61902200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:61901800-61902200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:61901800-61902200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
27	chr6:61901800-61902200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:61901800-61902200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr6:61901800-61902200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:61901800-61902200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
34	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:61901800-61902200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
38	chr6:61901800-61902200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:61901800-61902200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
40	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:61901800-61902200	ZNF genes & repeats	Brain Angular Gyrus	brain
42	chr6:61901800-61902200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
43	chr6:61901800-61902200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:61901800-61902200	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr6:61901800-61902200	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr6:61901800-61902200	ZNF genes & repeats	Colon Smooth Muscle	Colon
47	chr6:61901800-61902200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr6:61901800-61902200	ZNF genes & repeats	Fetal Brain Male	brain
49	chr6:61901800-61902200	ZNF genes & repeats	Fetal Heart	heart
50	chr6:61901800-61902200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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