Variant report

Variant	nsv603258
Chromosome Location	chr6:61904630-61958858
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
2	chr3:64125661..64126400-chr6:61912686..61913542,2	MCF-7	breast:
3	chr6:58777707..58778511-chr6:61909313..61909813,2	MCF-7	breast:
4	chr1:121483338..121485429-chr6:61912530..61914360,3	MCF-7	breast:
5	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:
6	chr6:58777671..58778345-chr6:61909292..61909815,4	MCF-7	breast:
7	chr6:58777651..58778267-chr6:61909313..61909813,3	MCF-7	breast:

Extended variants
information (count: 2781 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:2781 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12215067	chr6:61904630-61904631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs543845834	chr6:61904640-61904641	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs562841242	chr6:61904660-61904661	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs77872601	chr6:61904670-61904671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201292875	chr6:61904678-61904679	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs191170738	chr6:61904684-61904685	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs578199843	chr6:61904702-61904703	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs545233395	chr6:61904706-61904707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111260297	chr6:61904709-61904710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112576173	chr6:61904715-61904716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560755036	chr6:61904725-61904726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs143838094	chr6:61904729-61904730	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62413534	chr6:61904733-61904734	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs146184880	chr6:61904746-61904747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527758344	chr6:61904771-61904772	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543124832	chr6:61904777-61904778	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561399464	chr6:61904799-61904800	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531725529	chr6:61904811-61904812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550244522	chr6:61904812-61904813	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569007737	chr6:61904818-61904819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs377285034	chr6:61904840-61904841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533265366	chr6:61904850-61904851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551251502	chr6:61904851-61904852	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs566680256	chr6:61904867-61904868	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533774678	chr6:61904870-61904871	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555035895	chr6:61904891-61904892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201187394	chr6:61904901-61904902	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201779123	chr6:61904902-61904903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs549131893	chr6:61904905-61904906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs568923198	chr6:61904937-61904938	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs537487828	chr6:61904941-61904942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs202098504	chr6:61904952-61904953	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200371074	chr6:61904972-61904973	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201350204	chr6:61904983-61904984	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs578163709	chr6:61904994-61904995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs557735516	chr6:61905043-61905044	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113641443	chr6:61905049-61905050	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184763324	chr6:61905073-61905074	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs112045680	chr6:61905084-61905085	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200567891	chr6:61905099-61905100	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535638148	chr6:61905117-61905118	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201595698	chr6:61905127-61905128	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543281752	chr6:61905132-61905133	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561362703	chr6:61905133-61905134	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531843637	chr6:61905137-61905138	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7756008	chr6:61905143-61905144	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs190527617	chr6:61905155-61905156	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565295345	chr6:61905157-61905158	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374348422	chr6:61905181-61905182	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs551630222	chr6:61905198-61905199	ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:234 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61893800-61905800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:61900600-61905400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr6:61902000-61906600	Weak transcription	NHDF-Ad	bronchial
4	chr6:61902200-61905000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:61902200-61905000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:61902200-61905000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:61902200-61905000	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:61902200-61905000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:61902200-61905000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:61902200-61906600	Weak transcription	NHLF	lung
11	chr6:61902200-61906600	Weak transcription	Osteobl	bone
12	chr6:61903800-61905400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr6:61903800-61905600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr6:61904000-61905000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:61904000-61905000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:61904000-61905000	Weak transcription	Fetal Heart	heart
17	chr6:61904000-61906600	Weak transcription	HSMMtube	muscle
18	chr6:61904000-61906600	Weak transcription	K562	blood
19	chr6:61904200-61905000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:61904200-61905000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:61904200-61905000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:61904200-61905000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:61904200-61905000	Weak transcription	Left Ventricle	heart
24	chr6:61904600-61905400	ZNF genes & repeats	Liver	Liver
25	chr6:61904600-61905800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr6:61904800-61905400	ZNF genes & repeats	Fetal Kidney	kidney
27	chr6:61904800-61906200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr6:61905000-61905200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:61905000-61905200	Active TSS	Aorta	Aorta
30	chr6:61905000-61905200	ZNF genes & repeats	NH-A	brain
31	chr6:61905000-61905400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:61905000-61905400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:61905000-61905400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:61905000-61905400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:61905000-61905400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:61905000-61905400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:61905000-61905400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
38	chr6:61905000-61905400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:61905000-61905400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
40	chr6:61905000-61905400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
41	chr6:61905000-61905400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr6:61905000-61905400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr6:61905000-61905400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
44	chr6:61905000-61905400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:61905000-61905400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr6:61905000-61905400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:61905000-61905400	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr6:61905000-61905400	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr6:61905000-61905400	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr6:61905000-61905400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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