Variant report

Variant	nsv603259
Chromosome Location	chr6:61909073-61945777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:58777707..58778511-chr6:61909313..61909813,2	MCF-7	breast:
2	chr3:64125661..64126400-chr6:61912686..61913542,2	MCF-7	breast:
3	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
4	chr6:58777651..58778267-chr6:61909313..61909813,3	MCF-7	breast:
5	chr1:121483338..121485429-chr6:61912530..61914360,3	MCF-7	breast:
6	chr6:58777671..58778345-chr6:61909292..61909815,4	MCF-7	breast:
7	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:

Extended variants
information (count: 2170 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:2170 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10899727	chr6:61909073-61909074	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs548876514	chr6:61909085-61909086	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs547421105	chr6:61909090-61909091	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs566338003	chr6:61909107-61909108	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs530433527	chr6:61909135-61909136	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs548735707	chr6:61909155-61909156	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs201721967	chr6:61909164-61909165	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs570129248	chr6:61909194-61909195	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs200205918	chr6:61909195-61909196	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs113681451	chr6:61909218-61909219	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs537691395	chr6:61909243-61909244	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs377720342	chr6:61909246-61909247	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs371355255	chr6:61909247-61909248	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs570613384	chr6:61909253-61909254	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs376206722	chr6:61909255-61909256	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs368220268	chr6:61909256-61909257	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs534658534	chr6:61909260-61909261	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182978755	chr6:61909263-61909264	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs552961971	chr6:61909270-61909271	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs372017177	chr6:61909274-61909275	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs571979968	chr6:61909277-61909278	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs374538853	chr6:61909279-61909280	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs181287376	chr6:61909286-61909287	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs368197683	chr6:61909289-61909290	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs9500673	chr6:61909293-61909294	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs371283143	chr6:61909296-61909297	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs374814106	chr6:61909301-61909302	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs369785130	chr6:61909302-61909303	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs372148271	chr6:61909304-61909305	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs375908282	chr6:61909320-61909321	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs554879670	chr6:61909321-61909322	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs369648335	chr6:61909324-61909325	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs4289693	chr6:61909325-61909326	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs147127909	chr6:61909338-61909339	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs12525657	chr6:61909353-61909354	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs540994089	chr6:61909359-61909360	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs368044933	chr6:61909367-61909368	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs111864019	chr6:61909379-61909380	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs559413773	chr6:61909408-61909409	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs74916755	chr6:61909409-61909410	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs201588355	chr6:61909412-61909413	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs529743007	chr6:61909421-61909422	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs527449620	chr6:61909452-61909453	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs564056983	chr6:61909468-61909469	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs530959216	chr6:61909472-61909473	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs552746961	chr6:61909473-61909474	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs570576177	chr6:61909488-61909489	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs4305769	chr6:61909494-61909495	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs9500791	chr6:61909506-61909507	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs374508481	chr6:61909516-61909517	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61905000-61914400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr6:61905400-61909600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:61906600-61914600	ZNF genes & repeats	HepG2	liver
4	chr6:61906800-61913400	Weak transcription	HSMMtube	muscle
5	chr6:61906800-61914000	Weak transcription	K562	blood
6	chr6:61908200-61911200	Weak transcription	NH-A	brain
7	chr6:61908400-61911200	Weak transcription	Aorta	Aorta
8	chr6:61908600-61909600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:61908800-61909800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:61909400-61914400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr6:61909400-61914800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr6:61909600-61910000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:61909600-61910000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:61909600-61910000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
15	chr6:61909600-61910000	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr6:61909600-61910000	ZNF genes & repeats	Osteobl	bone
17	chr6:61909600-61910200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
18	chr6:61909600-61914400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr6:61909600-61914400	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr6:61909600-61914400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr6:61909600-61914400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr6:61909600-61914600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr6:61909800-61910000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:61909800-61914400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr6:61909800-61914400	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr6:61910600-61914400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr6:61910800-61911600	ZNF genes & repeats	Liver	Liver
28	chr6:61910800-61914400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:61910800-61914400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:61910800-61914600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:61911000-61911600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:61911000-61911600	ZNF genes & repeats	Dnd41	blood
33	chr6:61911200-61911400	Active TSS	Right Atrium	heart
34	chr6:61911200-61911600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:61911200-61911600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:61911200-61911600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr6:61911200-61911600	ZNF genes & repeats	Aorta	Aorta
38	chr6:61911200-61911600	ZNF genes & repeats	Psoas Muscle	Psoas
39	chr6:61911200-61911600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
40	chr6:61911200-61911600	ZNF genes & repeats	Stomach Mucosa	stomach
41	chr6:61911400-61911600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
42	chr6:61911400-61911600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
43	chr6:61911400-61911600	ZNF genes & repeats	Gastric	stomach
44	chr6:61911400-61911600	Bivalent/Poised TSS	Right Atrium	heart
45	chr6:61911600-61913200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:61911600-61913200	Weak transcription	Aorta	Aorta
47	chr6:61911600-61913200	Weak transcription	Gastric	stomach
48	chr6:61911600-61913200	Weak transcription	Psoas Muscle	Psoas
49	chr6:61912400-61914400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:61912400-61914400	ZNF genes & repeats	HUVEC	blood vessel

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