Variant report

Variant	nsv603339
Chromosome Location	chr6:62926139-62934455
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199713431	chr6:62926208-62926209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs569871449	chr6:62926223-62926224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188422608	chr6:62926235-62926236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs541173268	chr6:62926254-62926255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149471062	chr6:62926273-62926274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144789546	chr6:62926287-62926288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537272090	chr6:62926382-62926383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541994253	chr6:62926409-62926410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563875429	chr6:62926423-62926424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555608869	chr6:62926439-62926440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552792031	chr6:62926450-62926451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs114394194	chr6:62926488-62926489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562340356	chr6:62926601-62926602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540180490	chr6:62926608-62926609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558476104	chr6:62926609-62926610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528082074	chr6:62926611-62926612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557965735	chr6:62926615-62926616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs72870763	chr6:62926616-62926617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201678967	chr6:62926621-62926622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546753894	chr6:62926651-62926652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs574287501	chr6:62926652-62926653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs568141298	chr6:62926678-62926679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112104410	chr6:62926691-62926692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148140155	chr6:62926706-62926707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs116301772	chr6:62926719-62926720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs117413075	chr6:62926747-62926748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574337	chr6:62926780-62926781	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs186003743	chr6:62926797-62926798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566995007	chr6:62926933-62926934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs534020629	chr6:62927007-62927008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs541009862	chr6:62927044-62927045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142024617	chr6:62927076-62927077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs190921995	chr6:62927094-62927095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs533510097	chr6:62927107-62927108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563735327	chr6:62927156-62927157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs148481559	chr6:62927184-62927185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531133069	chr6:62927188-62927189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546221452	chr6:62927251-62927252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs503774	chr6:62927270-62927271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs528121942	chr6:62927284-62927285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546641978	chr6:62927326-62927327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568024600	chr6:62927399-62927400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369006799	chr6:62927406-62927407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550648244	chr6:62927407-62927408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79794780	chr6:62927435-62927436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539608831	chr6:62927439-62927440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557799603	chr6:62927443-62927444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576926311	chr6:62927486-62927487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs564174957	chr6:62927513-62927514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs186590842	chr6:62927522-62927523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Tetralogy of Fallot	22912587	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Pancreatic cancer	17952125	CNVD
Autism	19492091	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62921600-62929600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62932600-62933400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:62933400-62933800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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