Variant report

Variant	nsv603389
Chromosome Location	chr6:64946169-64980900
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:
2	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:

Extended variants
information (count: 919 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:919 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139487486	chr6:64953218-64953219	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs372199202	chr6:64953225-64953226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs144047725	chr6:64953228-64953229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs562782184	chr6:64953280-64953281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs543390568	chr6:64953311-64953312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113347148	chr6:64953324-64953325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs532296504	chr6:64953344-64953345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs547630569	chr6:64953371-64953372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs565754639	chr6:64953377-64953378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs9344916	chr6:64953380-64953381	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs548156316	chr6:64953446-64953447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs114545335	chr6:64953447-64953448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs538527670	chr6:64953486-64953487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs556534925	chr6:64953509-64953510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs567239529	chr6:64953613-64953614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs571618168	chr6:64953623-64953624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs180723530	chr6:64953627-64953628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs553965927	chr6:64953653-64953654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs185030194	chr6:64953675-64953676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs533241864	chr6:64953700-64953701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs540099444	chr6:64953721-64953722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs116529297	chr6:64953747-64953748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs570586325	chr6:64953754-64953755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs372402683	chr6:64953772-64953773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs576402884	chr6:64953775-64953776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs147327684	chr6:64953782-64953783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs112152294	chr6:64953790-64953791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs551416800	chr6:64953794-64953795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546691140	chr6:64953815-64953816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs564990603	chr6:64953855-64953856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563117903	chr6:64953884-64953885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs368237895	chr6:64953911-64953912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs560416186	chr6:64953966-64953967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs559623750	chr6:64954016-64954017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs140881869	chr6:64954095-64954096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs369805470	chr6:64954099-64954100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs78599768	chr6:64954100-64954101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549016024	chr6:64954167-64954168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs530386539	chr6:64954172-64954173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs552165862	chr6:64954183-64954184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs571579132	chr6:64954251-64954252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs373710641	chr6:64954269-64954270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs528202484	chr6:64954310-64954311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs372513172	chr6:64954323-64954324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs538974662	chr6:64954353-64954354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs9342186	chr6:64954384-64954385	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs534845689	chr6:64954525-64954526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369376675	chr6:64954599-64954600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs9342187	chr6:64954625-64954626	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs532330595	chr6:64954676-64954677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64953200-64954400	Enhancers	Hela-S3	cervix
2	chr6:64954400-64956200	Weak transcription	Hela-S3	cervix
3	chr6:64956200-64956600	Enhancers	Hela-S3	cervix
4	chr6:64956600-64957800	Weak transcription	Hela-S3	cervix
5	chr6:64957800-64960000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:64957800-64962600	Enhancers	Hela-S3	cervix
7	chr6:64958800-64959600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:64960000-64972400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:64962600-64963800	Weak transcription	Hela-S3	cervix
10	chr6:64963600-64965200	Enhancers	HUVEC	blood vessel
11	chr6:64963800-64965200	Enhancers	Hela-S3	cervix
12	chr6:64964200-64964800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:64964400-64965200	Enhancers	GM12878-XiMat	blood
14	chr6:64965200-64967800	Weak transcription	Hela-S3	cervix
15	chr6:64966400-64966800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:64966400-64967000	Enhancers	Fetal Intestine Small	intestine
17	chr6:64966600-64966800	Enhancers	Fetal Intestine Large	intestine
18	chr6:64966800-64968000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:64966800-64968200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:64967000-64967400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:64967400-64969800	Enhancers	Fetal Intestine Small	intestine
22	chr6:64967800-64968000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:64967800-64970200	Enhancers	Hela-S3	cervix
24	chr6:64967800-64970200	Enhancers	HepG2	liver
25	chr6:64968000-64968400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:64968000-64969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:64968200-64970000	Enhancers	Fetal Intestine Large	intestine
28	chr6:64968400-64969200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:64968400-64970400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:64968600-64969400	Enhancers	Stomach Mucosa	stomach
31	chr6:64968800-64969400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:64968800-64970200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:64969000-64970000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:64969000-64970200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:64969000-64970400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:64969200-64969400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:64969200-64970000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:64969400-64969800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:64969400-64970200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:64969400-64970400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:64969400-64972400	Weak transcription	Stomach Mucosa	stomach
42	chr6:64969800-64970000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:64969800-64970200	Weak transcription	Fetal Intestine Small	intestine
44	chr6:64970000-64971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:64970000-64972600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:64970000-64974000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:64970200-64970400	Enhancers	Fetal Intestine Small	intestine
48	chr6:64970200-64971800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:64970200-64972600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:64970200-64972600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links