Variant report

Variant	nsv603446
Chromosome Location	chr6:66314150-66340432
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534433058	chr6:66318803-66318804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530699542	chr6:66318809-66318810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554271923	chr6:66318824-66318825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs9345657	chr6:66318918-66318919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs28565198	chr6:66319156-66319157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185743805	chr6:66319158-66319159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537096783	chr6:66319177-66319178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556931067	chr6:66319196-66319197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577077864	chr6:66319214-66319215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529430278	chr6:66319215-66319216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs34304600	chr6:66319229-66319230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs60124536	chr6:66319243-66319244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76785556	chr6:66319244-66319245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7744893	chr6:66319271-66319272	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs370994413	chr6:66319383-66319384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs189588903	chr6:66319400-66319401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573104969	chr6:66319403-66319404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542329955	chr6:66319420-66319421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561001286	chr6:66319436-66319437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs180775457	chr6:66319438-66319439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546631465	chr6:66319468-66319469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs354391	chr6:66319480-66319481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs571707765	chr6:66319495-66319496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564581885	chr6:66319506-66319507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183960389	chr6:66319552-66319553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs531562264	chr6:66319642-66319643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145212797	chr6:66319644-66319645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs532687661	chr6:66319677-66319678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566702829	chr6:66319732-66319733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs550483319	chr6:66319796-66319797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs7745746	chr6:66319817-66319818	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs547877528	chr6:66319820-66319821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567819413	chr6:66319847-66319848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536603201	chr6:66319863-66319864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550566882	chr6:66319868-66319869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1027188	chr6:66319903-66319904	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs188640224	chr6:66319937-66319938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs149132181	chr6:66319942-66319943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs143196435	chr6:66319945-66319946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181399843	chr6:66319967-66319968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs34538583	chr6:66319974-66319975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535691698	chr6:66319980-66319981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs35472556	chr6:66319997-66319998	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs575701219	chr6:66320006-66320007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566544148	chr6:66320021-66320022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544244712	chr6:66320030-66320031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564526199	chr6:66320043-66320044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs72882242	chr6:66320159-66320160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs2351267	chr6:66320170-66320171	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs560496561	chr6:66320172-66320173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Retinitis pigmentosa	21519034	CNVD
Breast cancer	22522925	CNVD
Glioma	20126413	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66318800-66321400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:66320800-66321200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:66333000-66335000	Enhancers	A549	lung

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