Variant report

Variant	nsv603471
Chromosome Location	chr6:66459738-66472483
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:66470336..66472055-chr6:66477425..66479118,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560359656	chr6:66470280-66470281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs560240529	chr6:66470300-66470301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs9453394	chr6:66470303-66470304	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs9453395	chr6:66470306-66470307	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs151250177	chr6:66470328-66470329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs531917334	chr6:66470363-66470364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs570973793	chr6:66470394-66470395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9360152	chr6:66470416-66470417	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs145348045	chr6:66470417-66470418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs539122867	chr6:66470433-66470434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs546681839	chr6:66470437-66470438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs147651336	chr6:66470462-66470463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs532030202	chr6:66470472-66470473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542250073	chr6:66470534-66470535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs555227081	chr6:66470571-66470572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575188331	chr6:66470590-66470591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs189420662	chr6:66470631-66470632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs142254913	chr6:66470636-66470637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs4492179	chr6:66470669-66470670	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs540339739	chr6:66470681-66470682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs560584172	chr6:66470682-66470683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs181019493	chr6:66470703-66470704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs185290997	chr6:66470761-66470762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs569064713	chr6:66470764-66470765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs190153099	chr6:66470766-66470767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs531951251	chr6:66470767-66470768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs536592181	chr6:66470803-66470804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs531555556	chr6:66470877-66470878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs182770286	chr6:66470878-66470879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs565292216	chr6:66470885-66470886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs527910080	chr6:66470912-66470913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566703676	chr6:66470961-66470962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533962306	chr6:66470981-66470982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs187062669	chr6:66470983-66470984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs146008262	chr6:66470990-66470991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs559110700	chr6:66471025-66471026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs566264299	chr6:66471042-66471043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528837916	chr6:66471055-66471056	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs138571385	chr6:66471062-66471063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs560332428	chr6:66471089-66471090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs376192756	chr6:66471091-66471092	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs200224454	chr6:66471143-66471144	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs568520773	chr6:66471157-66471158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs537702033	chr6:66471183-66471184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs577384415	chr6:66471265-66471266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs367617727	chr6:66471303-66471304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs558055179	chr6:66471330-66471331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs113541456	chr6:66471389-66471390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs534024087	chr6:66471398-66471399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs191695224	chr6:66471426-66471427	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Retinitis pigmentosa	21519034	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66470200-66470600	Enhancers	A549	lung
2	chr6:66470200-66471000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:66470200-66473000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links