Variant report

Variant	nsv603633
Chromosome Location	chr6:69748600-69794079
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69753741..69757695-chr6:69762024..69764244,3	K562	blood:
2	chr6:69753741..69757695-chr6:69762024..69764244,3	K562	blood:
3	chr6:69762133..69764626-chr6:69765219..69767879,2	K562	blood:
4	chr6:69762821..69765416-chr6:69768469..69770043,2	K562	blood:
5	chr6:69762821..69765416-chr6:69768469..69770043,2	K562	blood:
6	chr6:69762133..69764626-chr6:69765219..69767879,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMBRD1-4	chr6:69784960-69785660	predAs_chen_BG187720_1

No data

Extended variants
information (count: 1845 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:1845 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11962923	chr6:69748600-69748601	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570625420	chr6:69748652-69748653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7767118	chr6:69748672-69748673	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs542406120	chr6:69748674-69748675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74802157	chr6:69748723-69748724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150354859	chr6:69748728-69748729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs531013467	chr6:69748739-69748740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550734063	chr6:69748836-69748837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535346295	chr6:69748896-69748897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533127483	chr6:69748897-69748898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs138073430	chr6:69748918-69748919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557085795	chr6:69748969-69748970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567161198	chr6:69748970-69748971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62416773	chr6:69749046-69749047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs75181249	chr6:69749052-69749053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs182586247	chr6:69749056-69749057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569006053	chr6:69749074-69749075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201966323	chr6:69749145-69749146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs397812835	chr6:69749157-69749158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537958434	chr6:69749185-69749186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142254681	chr6:69749195-69749196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs577572053	chr6:69749201-69749202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs188785152	chr6:69749273-69749274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558282033	chr6:69749322-69749323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs578123847	chr6:69749323-69749324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192878787	chr6:69749338-69749339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183484991	chr6:69749339-69749340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543163168	chr6:69749394-69749395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs367914069	chr6:69749405-69749406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs562328909	chr6:69749530-69749531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561334563	chr6:69749558-69749559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531370965	chr6:69749583-69749584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188821845	chr6:69749620-69749621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543468079	chr6:69749626-69749627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs150721671	chr6:69749634-69749635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs140724367	chr6:69749635-69749636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs34543678	chr6:69749651-69749652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200202257	chr6:69749656-69749657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564383222	chr6:69749657-69749658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs533403885	chr6:69749692-69749693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201209565	chr6:69749719-69749720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370542708	chr6:69749758-69749759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567198292	chr6:69749778-69749779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs529594994	chr6:69749780-69749781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549662179	chr6:69749781-69749782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569453230	chr6:69749787-69749788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs146234141	chr6:69749794-69749795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs590369	chr6:69749834-69749835	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs577871176	chr6:69749864-69749865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571247325	chr6:69749874-69749875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	17952125	CNVD
Acute lymphoblastic leukemia	21098271	CNVD

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
4	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69752200-69753600	Enhancers	Fetal Lung	lung
6	chr6:69753400-69753600	Enhancers	K562	blood
7	chr6:69753600-69753800	Flanking Active TSS	K562	blood
8	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
9	chr6:69753800-69754000	Enhancers	K562	blood
10	chr6:69754000-69754200	Flanking Active TSS	K562	blood
11	chr6:69754200-69754400	Enhancers	K562	blood
12	chr6:69756400-69769000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69756600-69759600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:69758600-69760400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:69759600-69760400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:69763600-69770200	Weak transcription	Brain Germinal Matrix	brain
18	chr6:69769000-69770000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:69770000-69775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:69770200-69771000	Enhancers	Brain Germinal Matrix	brain
21	chr6:69770200-69771400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:69771000-69772200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:69771400-69776400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:69772200-69772400	Enhancers	Brain Germinal Matrix	brain
25	chr6:69773200-69775200	Enhancers	A549	lung
26	chr6:69773600-69774000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:69774000-69774400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:69774400-69775200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:69775000-69775200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:69775200-69780200	Weak transcription	A549	lung
31	chr6:69776400-69777600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:69780200-69782400	Enhancers	A549	lung
33	chr6:69783000-69783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:69783600-69783800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:69783800-69784400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain
37	chr6:69784400-69784600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:69785800-69786600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:69792600-69793200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links