Variant report

Variant	nsv603693
Chromosome Location	chr6:74229258-74290291
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2715)
CpG islands
(count:1528)
Chromatin interactive
region (count:214)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2715 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:74258154-74258499	K562	blood:	n/a	n/a
2	ARID3A	chr6:74238600-74238899	K562	blood:	n/a	n/a
3	ARID3A	chr6:74229677-74231780	K562	blood:	n/a	n/a
4	ARID3A	chr6:74233732-74234125	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:74289650-74291137	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:74276502-74277245	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:74233494-74234025	K562	blood:	n/a	n/a
8	ARID3A	chr6:74230504-74232034	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:74233166-74233528	HepG2	liver:	n/a	n/a
10	ARID3A	chr6:74258414-74258820	HepG2	liver:	n/a	n/a
11	ARID3A	chr6:74274373-74275234	K562	blood:	n/a	n/a
12	ARID3A	chr6:74275895-74276290	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:74289986-74290633	K562	blood:	n/a	n/a
14	ARID3A	chr6:74232749-74232930	HepG2	liver:	n/a	n/a
15	ATF1	chr6:74230535-74231935	K562	blood:	n/a	n/a
16	ATF1	chr6:74274429-74274877	K562	blood:	n/a	n/a
17	ATF2	chr6:74232655-74234016	GM12878	blood:	n/a	n/a
18	ATF2	chr6:74269858-74271022	GM12878	blood:	n/a	n/a
19	ATF2	chr6:74275819-74276203	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr6:74232967-74233816	GM12878	blood:	n/a	n/a
21	ATF2	chr6:74289679-74290921	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr6:74269816-74271143	GM12878	blood:	n/a	n/a
23	ATF2	chr6:74247450-74247704	GM12878	blood:	n/a	n/a
24	ATF2	chr6:74231294-74232029	GM12878	blood:	n/a	n/a
25	ATF2	chr6:74228836-74231752	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr6:74228830-74231217	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr6:74289576-74290656	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr6:74229593-74232394	GM12878	blood:	n/a	n/a
29	ATF2	chr6:74229693-74231130	GM12878	blood:	n/a	n/a
30	ATF2	chr6:74289924-74290894	GM12878	blood:	n/a	n/a
31	ATF2	chr6:74233236-74233667	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF2	chr6:74289948-74290927	GM12878	blood:	n/a	n/a
33	ATF3	chr6:74230382-74231052	A549	lung:	n/a	n/a
34	ATF3	chr6:74290080-74290357	H1-hESC	embryonic stem cell:	n/a	n/a
35	ATF3	chr6:74289955-74290616	A549	lung:	n/a	n/a
36	ATF3	chr6:74290021-74290285	HepG2	liver:	n/a	n/a
37	ATF3	chr6:74289854-74290481	A549	lung:	n/a	n/a
38	ATF3	chr6:74230345-74231161	A549	lung:	n/a	chr6:74231119-74231127
39	ATF3	chr6:74289962-74290309	H1-hESC	embryonic stem cell:	n/a	n/a
40	ATF3	chr6:74230446-74231197	K562	blood:	n/a	chr6:74231119-74231127
41	ATF3	chr6:74289990-74290610	K562	blood:	n/a	n/a
42	ATF3	chr6:74290054-74290306	K562	blood:	n/a	n/a
43	ATF3	chr6:74229873-74230319	K562	blood:	n/a	n/a
44	BACH1	chr6:74289916-74290811	K562	blood:	n/a	chr6:74290233-74290247
45	BACH1	chr6:74287382-74287615	K562	blood:	n/a	n/a
46	BACH1	chr6:74289297-74289318	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr6:74230540-74231172	H1-hESC	embryonic stem cell:	n/a	n/a
48	BACH1	chr6:74233455-74233479	K562	blood:	n/a	n/a
49	BACH1	chr6:74233254-74233542	H1-hESC	embryonic stem cell:	n/a	n/a
50	BACH1	chr6:74289609-74290854	H1-hESC	embryonic stem cell:	n/a	chr6:74290233-74290247

(count:1528 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:74230158-74230208	GM12891	blood:	n/a
2	chr6:74289980-74290030	ECC-1	luminal epithelium:	n/a
3	chr6:74233640-74233690	HMEC	breast:	n/a
4	chr6:74230158-74230208	GM12891	blood:	n/a
5	chr6:74289980-74290030	ECC-1	luminal epithelium:	n/a
6	chr6:74233640-74233690	HMEC	breast:	n/a
7	chr6:74233399-74233449	SK-N-MC	brain:	n/a
8	chr6:74233640-74233690	ovcar-3	ovarian:	n/a
9	chr6:74230918-74230968	U87	brain:	n/a
10	chr6:74229933-74229983	IMR90	lung:	fetal
11	chr6:74232108-74232158	HRCEpiC	kidney:	n/a
12	chr6:74268449-74268499	U87	brain:	n/a
13	chr6:74231252-74231302	HRCEpiC	kidney:	n/a
14	chr6:74233269-74233319	AG04450	lung:	fetal
15	chr6:74229257-74229307	AG04450	lung:	fetal
16	chr6:74230343-74230393	SKMC	muscle:	n/a
17	chr6:74230734-74230784	Caco-2	colon:	n/a
18	chr6:74229933-74229983	SAEC	small airway:	n/a
19	chr6:74233269-74233319	Caco-2	colon:	n/a
20	chr6:74230734-74230784	HRE	kidney:	n/a
21	chr6:74229257-74229307	ProgFib	skin:	n/a
22	chr6:74230764-74230814	HAEpiC	amniotic membrane:	n/a
23	chr6:74233269-74233319	AoSMC	blood vessel:	n/a
24	chr6:74276973-74277023	ECC-1	luminal epithelium:	n/a
25	chr6:74230008-74230058	HUVEC	blood vessel:	n/a
26	chr6:74230158-74230208	SK-N-MC	brain:	n/a
27	chr6:74230681-74230731	A549	lung:	n/a
28	chr6:74233269-74233319	SKMC	muscle:	n/a
29	chr6:74230425-74230475	T-47D	breast:	n/a
30	chr6:74231252-74231302	AoSMC	blood vessel:	n/a
31	chr6:74230158-74230208	HCT-116	colon:	n/a
32	chr6:74229257-74229307	Hepatocyte	liver:	n/a
33	chr6:74229257-74229307	AG04449	skin:	fetal
34	chr6:74290220-74290270	IMR90	lung:	fetal
35	chr6:74230343-74230393	HNPCEpiC	eye:	n/a
36	chr6:74230918-74230968	HNPCEpiC	eye:	n/a
37	chr6:74233510-74233560	ProgFib	skin:	n/a
38	chr6:74232108-74232158	HPAEpiC	pulmonary alveolar:	n/a
39	chr6:74230918-74230968	HRCEpiC	kidney:	n/a
40	chr6:74230764-74230814	T-47D	breast:	n/a
41	chr6:74282434-74282484	HRPEpiC	eye:	n/a
42	chr6:74276973-74277023	ovcar-3	ovarian:	n/a
43	chr6:74230425-74230475	AG04449	skin:	fetal
44	chr6:74230008-74230058	HRE	kidney:	n/a
45	chr6:74230425-74230475	AG04450	lung:	fetal
46	chr6:74233510-74233560	HCT-116	colon:	n/a
47	chr6:74233269-74233319	BJ	skin:	n/a
48	chr6:74230681-74230731	AG04449	skin:	fetal
49	chr6:74230734-74230784	K562	blood:	n/a
50	chr6:74289980-74290030	HRCEpiC	kidney:	n/a

(count:214 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr13:73632320..73633261-chr6:74230228..74230828,2	Hela-S3	cervix:
2	chr12:44199917..44200514-chr6:74230104..74230869,2	Hela-S3	cervix:
3	chr6:74220978..74235626-chr6:74283533..74299827,68	K562	blood:
4	chr6:74229375..74231443-chr6:74255179..74257233,2	K562	blood:
5	chr6:74288307..74290175-chr6:74362549..74365093,2	K562	blood:
6	chr6:74222492..74235445-chr6:74283533..74292948,42	K562	blood:
7	chr6:74157393..74162572-chr6:74229200..74231801,6	MCF-7	breast:
8	chr15:65596519..65597400-chr6:74229078..74229977,2	Hela-S3	cervix:
9	chr6:74257538..74259934-chr6:74264799..74266356,2	K562	blood:
10	chr6:74274687..74279711-chr6:74293912..74296161,4	K562	blood:
11	chr12:131356217..131357022-chr6:74230241..74230806,2	NB4	blood:
12	chr6:74018617..74020402-chr6:74229038..74231578,2	K562	blood:
13	chr6:74228889..74230513-chr6:74269068..74271779,2	K562	blood:
14	chr6:74230283..74230812-chr9:21802552..21803080,2	Hela-S3	cervix:
15	chr6:74232912..74233717-chr7:154794709..154795565,2	NB4	blood:
16	chr2:110370972..110371523-chr6:74230603..74231263,2	Hela-S3	cervix:
17	chr6:74223257..74225593-chr6:74265875..74267970,2	MCF-7	breast:
18	chr19:1652085..1652812-chr6:74230264..74231263,2	Hela-S3	cervix:
19	chr6:74223949..74234010-chr6:74285694..74297775,46	MCF-7	breast:
20	chr6:74227140..74235678-chr6:74271460..74282263,27	K562	blood:
21	chr1:249200523..249201043-chr6:74230318..74230902,2	Hela-S3	cervix:
22	chr5:81267341..81268122-chr6:74230350..74231058,2	Hela-S3	cervix:
23	chr6:74229899..74231752-chr6:74257200..74259268,3	MCF-7	breast:
24	chr17:58601960..58604487-chr6:74288896..74291198,2	MCF-7	breast:
25	chr6:74250116..74252715-chr6:74255557..74258445,2	K562	blood:
26	chr6:74277679..74279983-chr6:74283539..74285265,2	K562	blood:
27	chr6:74231501..74234013-chr6:75953624..75956455,2	MCF-7	breast:
28	chr6:74229297..74231003-chr6:74251302..74252837,2	K562	blood:
29	chr6:74229302..74231632-chr8:103666566..103668459,2	MCF-7	breast:
30	chr6:74287590..74292040-chr6:74293648..74296536,4	MCF-7	breast:
31	chr6:74278735..74283200-chr6:74288390..74290564,5	K562	blood:
32	chr6:74220976..74234980-chr6:74352572..74366941,62	K562	blood:
33	chr19:1026112..1026717-chr6:74233509..74234038,2	HCT-116	colon:
34	chr6:74228067..74234767-chr6:74357105..74365312,16	MCF-7	breast:
35	chr6:74222835..74225633-chr6:74251462..74253727,3	K562	blood:
36	chr12:57081705..57082520-chr6:74230123..74230932,2	HCT-116	colon:
37	chr15:75747614..75748882-chr6:74230241..74231226,3	Hela-S3	cervix:
38	chr17:42422412..42423047-chr6:74229797..74230960,4	Hela-S3	cervix:
39	chr6:74229165..74233433-chr6:74353361..74356645,5	MCF-7	breast:
40	chr6:74273534..74277710-chr6:74287099..74290160,5	K562	blood:
41	chr17:26970205..26972815-chr6:74228570..74230969,2	MCF-7	breast:
42	chr6:74265978..74268352-chr6:74362467..74364579,2	K562	blood:
43	chr3:143690723..143691617-chr6:74230015..74230752,2	Hela-S3	cervix:
44	chr6:74284448..74288356-chr6:74288794..74290756,3	K562	blood:
45	chr11:122932644..122933304-chr6:74230270..74230962,2	HCT-116	colon:
46	chr6:74230266..74231191-chr7:39988525..39989555,3	Hela-S3	cervix:
47	chr6:74269349..74272192-chr6:74274693..74276750,2	K562	blood:
48	chr6:74232078..74235079-chr6:74243267..74245591,3	K562	blood:
49	chr6:74243409..74245611-chr6:74258202..74260560,2	K562	blood:
50	chr6:74230303..74231191-chr6:146136002..146136502,2	NB4	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTO1-2	chr6:74268368-74268761	NONHSAT113575
2	lnc-MTO1-1	chr6:74280010-74280256	ENSG00000229862.1
3	lnc-MTO1-1	chr6:74280010-74280319	ENSG00000229862.1
4	lnc-MTO1-1	chr6:74234179-74234269	ENSG00000229862.1
5	lnc-MB21D1-3	chr6:74231230-74231291	NONHSAT113566
6	lnc-MTO1-1	chr6:74233341-74233558	ENSG00000229862.1
7	lnc-MTO1-1	chr6:74235609-74235725	ENSG00000229862.1
8	lnc-MTO1-1	chr6:74234179-74234269	ENSG00000229862.1
9	lnc-MTO1-1	chr6:74233564-74233631	ENSG00000229862.1

No data

Variant related genes	Relation type
EEF1A1	TF binding region
ENSG00000229862	TF binding region
ENSG00000223967	TF binding region
EEF1A1	CpG island
ENSG00000229862	CpG island
ENSG00000223967	CpG island
ENSG00000159445	chromatin interactions
ENSG00000179743	chromatin interactions
ENSG00000131373	chromatin interactions
ENSG00000260032	chromatin interactions
ENSG00000124693	chromatin interactions
ENSG00000169814	chromatin interactions
ENSG00000180098	chromatin interactions
ENSG00000100991	chromatin interactions
ENSG00000169764	chromatin interactions
ENSG00000112701	chromatin interactions
ENSG00000218459	chromatin interactions
ENSG00000139644	chromatin interactions
ENSG00000187990	chromatin interactions
ENSG00000070756	chromatin interactions
ENSG00000257103	chromatin interactions
ENSG00000166192	chromatin interactions
ENSG00000223967	chromatin interactions
ENSG00000135847	chromatin interactions
ENSG00000197956	chromatin interactions
ENSG00000144401	chromatin interactions
ENSG00000207023	chromatin interactions
ENSG00000178381	chromatin interactions
ENSG00000152348	chromatin interactions
ENSG00000149187	chromatin interactions
ENSG00000160888	chromatin interactions
ENSG00000186687	chromatin interactions
ENSG00000137200	chromatin interactions
ENSG00000155090	chromatin interactions
ENSG00000243501	chromatin interactions
ENSG00000200972	chromatin interactions
ENSG00000030582	chromatin interactions
ENSG00000158769	chromatin interactions
ENSG00000163435	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000273344	chromatin interactions
ENSG00000064666	chromatin interactions
ENSG00000140905	chromatin interactions
ENSG00000234678	chromatin interactions
ENSG00000148943	chromatin interactions
ENSG00000165115	chromatin interactions
ENSG00000070404	chromatin interactions
ENSG00000172757	chromatin interactions
ENSG00000131263	chromatin interactions
ENSG00000106355	chromatin interactions
ENSG00000087586	chromatin interactions
ENSG00000168274	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000105778	chromatin interactions
ENSG00000141979	chromatin interactions
ENSG00000048162	chromatin interactions
ENSG00000119899	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000110536	chromatin interactions
ENSG00000050820	chromatin interactions
ENSG00000011275	chromatin interactions
ENSG00000184825	chromatin interactions
ENSG00000263378	chromatin interactions
ENSG00000102554	chromatin interactions
ENSG00000101138	chromatin interactions
ENSG00000070444	chromatin interactions
ENSG00000159140	chromatin interactions
ENSG00000237605	chromatin interactions
ENSG00000158711	chromatin interactions
ENSG00000146909	chromatin interactions
ENSG00000111799	chromatin interactions
ENSG00000235652	chromatin interactions
ENSG00000153914	chromatin interactions
ENSG00000164430	chromatin interactions
ENSG00000068697	chromatin interactions
ENSG00000076382	chromatin interactions
ENSG00000006327	chromatin interactions
ENSG00000103260	chromatin interactions
ENSG00000007202	chromatin interactions
ENSG00000185909	chromatin interactions
ENSG00000145907	chromatin interactions
ENSG00000105085	chromatin interactions
ENSG00000229852	chromatin interactions
ENSG00000118260	chromatin interactions
ENSG00000213619	chromatin interactions
ENSG00000149554	chromatin interactions
ENSG00000259826	chromatin interactions
ENSG00000245573	chromatin interactions
ENSG00000157212	chromatin interactions
ENSG00000200169	chromatin interactions
ENSG00000100600	chromatin interactions
ENSG00000136271	chromatin interactions
ENSG00000235159	chromatin interactions
ENSG00000166261	chromatin interactions
ENSG00000109971	chromatin interactions
ENSG00000135297	chromatin interactions
ENSG00000223821	chromatin interactions
ENSG00000229117	chromatin interactions
ENSG00000162585	chromatin interactions
ENSG00000105221	chromatin interactions
ENSG00000185220	chromatin interactions
ENSG00000066933	chromatin interactions
ENSG00000146247	chromatin interactions
ENSG00000101161	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000160691	chromatin interactions
ENSG00000159131	chromatin interactions
ENSG00000123810	chromatin interactions
ENSG00000110958	chromatin interactions
ENSG00000171223	chromatin interactions
ENSG00000169375	chromatin interactions
ENSG00000134107	chromatin interactions
ENSG00000183283	chromatin interactions
ENSG00000272888	chromatin interactions
ENSG00000133872	chromatin interactions
ENSG00000223725	chromatin interactions
ENSG00000111142	chromatin interactions
ENSG00000229043	chromatin interactions
ENSG00000099810	chromatin interactions
ENSG00000071564	chromatin interactions
ENSG00000264545	chromatin interactions
ENSG00000151239	chromatin interactions
ENSG00000102978	chromatin interactions
ENSG00000226328	chromatin interactions
ENSG00000134333	chromatin interactions
ENSG00000112695	chromatin interactions
ENSG00000183696	chromatin interactions
ENSG00000135314	chromatin interactions
ENSG00000132570	chromatin interactions
ENSG00000227195	chromatin interactions
ENSG00000197903	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000272186	chromatin interactions
ENSG00000146066	chromatin interactions
ENSG00000171889	chromatin interactions
ENSG00000142046	chromatin interactions
ENSG00000132341	chromatin interactions
ENSG00000187187	chromatin interactions
ENSG00000143479	chromatin interactions
ENSG00000259006	chromatin interactions
ENSG00000229862	chromatin interactions
ENSG00000181744	chromatin interactions
ENSG00000186522	chromatin interactions
ENSG00000093000	chromatin interactions
ENSG00000223734	chromatin interactions
ENSG00000160695	chromatin interactions

Extended variants
information (count: 2304 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:2304 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2073466	chr6:74229258-74229259	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs535875224	chr6:74229271-74229272	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
3	rs571210896	chr6:74229273-74229274	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
4	rs538738926	chr6:74229326-74229327	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
5	rs556653424	chr6:74229351-74229352	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
6	rs568811842	chr6:74229362-74229363	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
7	rs72961972	chr6:74229399-74229400	Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
8	rs4708060	chr6:74229405-74229406	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs181225703	chr6:74229419-74229420	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
10	rs540380222	chr6:74229424-74229425	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
11	rs186201572	chr6:74229435-74229436	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
12	rs189227667	chr6:74229439-74229440	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
13	rs544715817	chr6:74229446-74229447	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
14	rs562869644	chr6:74229455-74229456	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
15	rs530090499	chr6:74229457-74229458	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
16	rs147034609	chr6:74229469-74229470	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
17	rs551452714	chr6:74229480-74229481	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
18	rs563404109	chr6:74229499-74229500	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
19	rs531845372	chr6:74229566-74229567	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
20	rs561166847	chr6:74229567-74229568	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
21	rs368012545	chr6:74229575-74229576	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
22	rs556236273	chr6:74229591-74229592	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
23	rs372237769	chr6:74229600-74229601	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
24	rs528399233	chr6:74229618-74229619	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
25	rs138320387	chr6:74229642-74229643	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
26	rs143861012	chr6:74229708-74229709	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
27	rs202142846	chr6:74229724-74229725	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
28	rs375905062	chr6:74229741-74229742	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
29	rs370546611	chr6:74229744-74229745	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
30	rs373124203	chr6:74229750-74229751	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
31	rs377342040	chr6:74229757-74229758	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
32	rs370980757	chr6:74229763-74229764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
33	rs113657688	chr6:74229790-74229791	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	25 gene(s)	Overlapped CNVs	n/a
34	rs2073465	chr6:74229792-74229793	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	25 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs549140351	chr6:74229837-74229838	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
36	rs550631790	chr6:74229847-74229848	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
37	rs568898136	chr6:74229848-74229849	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
38	rs535841231	chr6:74229853-74229854	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
39	rs567537060	chr6:74229879-74229880	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	31 gene(s)	Overlapped CNVs	n/a
40	rs566780946	chr6:74229886-74229887	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	32 gene(s)	Overlapped CNVs	n/a
41	rs142620389	chr6:74229933-74229934	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	33 gene(s)	Overlapped CNVs	n/a
42	rs186446616	chr6:74229938-74229939	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	33 gene(s)	Overlapped CNVs	n/a
43	rs577348109	chr6:74230028-74230029	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
44	rs191013141	chr6:74230089-74230090	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	48 gene(s)	Overlapped CNVs	n/a
45	rs556611408	chr6:74230103-74230104	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	48 gene(s)	Overlapped CNVs	n/a
46	rs78993679	chr6:74230135-74230136	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	50 gene(s)	Overlapped CNVs	n/a
47	rs529361296	chr6:74230146-74230147	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	50 gene(s)	Overlapped CNVs	n/a
48	rs542201496	chr6:74230148-74230149	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	51 gene(s)	Overlapped CNVs	n/a
49	rs368733475	chr6:74230175-74230176	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	56 gene(s)	Overlapped CNVs	n/a
50	rs371657995	chr6:74230187-74230188	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	58 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1499 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74224600-74230600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr6:74224800-74230600	Transcr. at gene 5' and 3'	A549	lung
3	chr6:74225000-74230000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:74225000-74230000	Transcr. at gene 5' and 3'	NH-A	brain
5	chr6:74225000-74231600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:74225600-74230000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:74225600-74230000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:74225600-74230000	Transcr. at gene 5' and 3'	K562	blood
9	chr6:74225600-74230600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:74225800-74230000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
11	chr6:74225800-74230000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
12	chr6:74225800-74230000	Transcr. at gene 5' and 3'	Osteobl	bone
13	chr6:74225800-74230600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:74226000-74230400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
15	chr6:74226000-74230600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:74226000-74230600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
17	chr6:74226000-74230800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
18	chr6:74226200-74230600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:74226400-74230200	Transcr. at gene 5' and 3'	Hela-S3	cervix
20	chr6:74226400-74230600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
21	chr6:74226400-74230600	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
22	chr6:74226400-74230600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
23	chr6:74226400-74230600	Transcr. at gene 5' and 3'	NHEK	skin
24	chr6:74226400-74230800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:74226600-74230400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:74226600-74230400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:74226600-74230400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
28	chr6:74226800-74229400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:74226800-74230800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
30	chr6:74227000-74230400	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:74227200-74229600	Weak transcription	Ovary	ovary
32	chr6:74227200-74229800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:74227200-74232000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:74227600-74230000	Transcr. at gene 5' and 3'	HepG2	liver
35	chr6:74227600-74230000	Transcr. at gene 5' and 3'	HSMM	muscle
36	chr6:74227600-74230000	Transcr. at gene 5' and 3'	HSMMtube	muscle
37	chr6:74227600-74230200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
38	chr6:74227600-74230600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
39	chr6:74227600-74230800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:74227600-74230800	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
41	chr6:74227800-74229600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:74227800-74229600	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:74227800-74230000	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
44	chr6:74227800-74230000	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
45	chr6:74227800-74230000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
46	chr6:74227800-74230400	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
47	chr6:74227800-74230600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:74227800-74230600	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:74227800-74231800	Active TSS	Placenta Amnion	Placenta Amnion
50	chr6:74227800-74233800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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