Variant report

Variant	nsv603791
Chromosome Location	chr6:77317683-77322488
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:190 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1457968	chr6:77317683-77317684	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs565410563	chr6:77317694-77317695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532845158	chr6:77317712-77317713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149552980	chr6:77317720-77317721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569100119	chr6:77317746-77317747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144402483	chr6:77317812-77317813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548257702	chr6:77317856-77317857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs58431895	chr6:77317874-77317875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs533908696	chr6:77317907-77317908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181573926	chr6:77317917-77317918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112308554	chr6:77317967-77317968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74369183	chr6:77318067-77318068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs113770946	chr6:77318114-77318115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141566695	chr6:77318117-77318118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542079229	chr6:77318128-77318129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546219411	chr6:77318184-77318185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560255560	chr6:77318200-77318201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs563700564	chr6:77318213-77318214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71561468	chr6:77318220-77318221	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs1471153	chr6:77318258-77318259	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs146376129	chr6:77318263-77318264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531250642	chr6:77318316-77318317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373677485	chr6:77318324-77318325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12173408	chr6:77318334-77318335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368109775	chr6:77318341-77318342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372793540	chr6:77318390-77318391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs181583541	chr6:77318397-77318398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530219057	chr6:77318403-77318404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs548392645	chr6:77318427-77318428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1841003	chr6:77318431-77318432	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs139692881	chr6:77318445-77318446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143274683	chr6:77318446-77318447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs531064656	chr6:77318491-77318492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs550776617	chr6:77318495-77318496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs186184693	chr6:77318499-77318500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34655564	chr6:77318552-77318553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2500201	chr6:77318589-77318590	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs574799016	chr6:77318620-77318621	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373921744	chr6:77318622-77318623	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535615054	chr6:77318627-77318628	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535418358	chr6:77318653-77318654	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373518404	chr6:77318658-77318659	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs146683074	chr6:77318661-77318662	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs13193500	chr6:77318680-77318681	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139048675	chr6:77318784-77318785	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs545875518	chr6:77318790-77318791	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528225516	chr6:77318794-77318795	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs554484315	chr6:77318823-77318824	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575970967	chr6:77318854-77318855	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149871484	chr6:77318936-77318937	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77316800-77322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:77318600-77318800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:77318800-77319000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:77318800-77319200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:77319000-77320200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:77319000-77320800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:77319200-77319400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:77319400-77326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:77320200-77320400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:77320800-77321000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:77321000-77321400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:77321400-77322400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:77321400-77323200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:77321600-77322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:77322200-77322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:77322200-77323200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:77322200-77323400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:77322200-77323400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:77322400-77322800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:77322400-77323000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:77322400-77323000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:77322400-77323200	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links