Variant report

Variant	nsv603802
Chromosome Location	chr6:77448731-77459678
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 645 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:645 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9447767	chr6:77448731-77448732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs181116511	chr6:77448737-77448738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186500957	chr6:77448793-77448794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs534124143	chr6:77448809-77448810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558771428	chr6:77448819-77448820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs9447768	chr6:77448847-77448848	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs191807229	chr6:77448855-77448856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562566179	chr6:77448870-77448871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs139161161	chr6:77448919-77448920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533764162	chr6:77448927-77448928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs574662991	chr6:77448936-77448937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs9443285	chr6:77448946-77448947	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs368139174	chr6:77448973-77448974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62433415	chr6:77449014-77449015	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs577106738	chr6:77449049-77449050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549710783	chr6:77449054-77449055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs143992876	chr6:77449061-77449062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568980082	chr6:77449088-77449089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62433416	chr6:77449110-77449111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550903997	chr6:77449137-77449138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs183639121	chr6:77449138-77449139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536393685	chr6:77449145-77449146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548555452	chr6:77449148-77449149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188682078	chr6:77449158-77449159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534061249	chr6:77449163-77449164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554529514	chr6:77449171-77449172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs79036910	chr6:77449174-77449175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577222197	chr6:77449205-77449206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs58286562	chr6:77449207-77449208	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs146408362	chr6:77449252-77449253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs66759545	chr6:77449257-77449258	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs9361118	chr6:77449262-77449263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143523715	chr6:77449264-77449265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574471086	chr6:77449302-77449303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs6453932	chr6:77449339-77449340	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs190861656	chr6:77449357-77449358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571735624	chr6:77449385-77449386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs112548419	chr6:77449389-77449390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545417605	chr6:77449405-77449406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs183414211	chr6:77449471-77449472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532699320	chr6:77449492-77449493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs139995003	chr6:77449513-77449514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201555002	chr6:77449523-77449524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs114074927	chr6:77449534-77449535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186672190	chr6:77449546-77449547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200073622	chr6:77449613-77449614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548730972	chr6:77449617-77449618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs55734209	chr6:77449672-77449673	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs191529879	chr6:77449675-77449676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs9361119	chr6:77449699-77449700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77441000-77452800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:77452800-77454400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:77454400-77456400	Weak transcription	H1 Cell Line	embryonic stem cell

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