Variant report

Variant	nsv603805
Chromosome Location	chr6:77449699-77459678
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 596 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:596 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9361119	chr6:77449699-77449700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs377274912	chr6:77449727-77449728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201899358	chr6:77449728-77449729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs370027770	chr6:77449749-77449750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs58077551	chr6:77449750-77449751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562896625	chr6:77449753-77449754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs56194429	chr6:77449754-77449755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs12205565	chr6:77449762-77449763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs56063956	chr6:77449764-77449765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs397768791	chr6:77449765-77449766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs200939183	chr6:77449766-77449767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs59584536	chr6:77449767-77449768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs1841001	chr6:77449768-77449769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs58493732	chr6:77449815-77449816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs77545725	chr6:77449826-77449827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541972775	chr6:77449848-77449849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs556312878	chr6:77449856-77449857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568195692	chr6:77449879-77449880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs535511652	chr6:77449935-77449936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs553423494	chr6:77449972-77449973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs13207081	chr6:77449979-77449980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs13207405	chr6:77449981-77449982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571817324	chr6:77449990-77449991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545347374	chr6:77449999-77450000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184820235	chr6:77450019-77450020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375770683	chr6:77450046-77450047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs56358955	chr6:77450072-77450073	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs74936268	chr6:77450073-77450074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs193144390	chr6:77450075-77450076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs57206673	chr6:77450089-77450090	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs560528392	chr6:77450096-77450097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527792824	chr6:77450153-77450154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554148319	chr6:77450221-77450222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12528989	chr6:77450260-77450261	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs142950736	chr6:77450263-77450264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs570798902	chr6:77450281-77450282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531620336	chr6:77450292-77450293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369299995	chr6:77450298-77450299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564356925	chr6:77450341-77450342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549835996	chr6:77450359-77450360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190302957	chr6:77450364-77450365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs112271825	chr6:77450397-77450398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs553554285	chr6:77450430-77450431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568606403	chr6:77450432-77450433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs181796440	chr6:77450439-77450440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113290557	chr6:77450451-77450452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557717841	chr6:77450461-77450462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs575974624	chr6:77450474-77450475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150342308	chr6:77450479-77450480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs13207756	chr6:77450505-77450506	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77441000-77452800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:77452800-77454400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:77454400-77456400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links