Variant report

Variant	nsv603806
Chromosome Location	chr6:77587889-77787815
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77407151..77408023-chr6:77621937..77622579,2	MCF-7	breast:
2	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
3	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:
4	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
5	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
6	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
7	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
8	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
9	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
10	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
11	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:
12	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
13	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
14	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77666315-77666328	NONHSAT113650
2	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes
3	lnc-MYO6-15	chr6:77628029-77628655	NONHSAT113650
4	lnc-MYO6-15	chr6:77661074-77663494	NONHSAT113651
5	lnc-MYO6-15	chr6:77682889-77683422	NONHSAT113650
6	lnc-MYO6-3	chr6:77698014-77698599	XLOC_005355
7	lnc-MYO6-15	chr6:77661074-77663494	FPKM1_group_27832_transcript_1
8	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650
9	lnc-MYO6-15	chr6:77638732-77638769	NONHSAT113650
10	lnc-MYO6-15	chr6:77663786-77667065	NONHSAT113651
11	lnc-MYO6-15	chr6:77658958-77659487	NONHSAT113650
12	lnc-MYO6-3	chr6:77599901-77599940	XLOC_005355
13	lnc-MYO6-15	chr6:77665983-77666282	NONHSAT113650
14	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
15	lnc-MYO6-15	chr6:77663786-77664113	FPKM1_group_27832_transcript_1

No data

Variant related genes	Relation type
EIF4G3	miRNA target sites

Extended variants
information (count: 3490 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:3490 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2050427	chr6:77587889-77587890	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs573975788	chr6:77587905-77587906	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541747245	chr6:77587937-77587938	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs559685240	chr6:77588077-77588078	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs191328257	chr6:77588088-77588089	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183134576	chr6:77588118-77588119	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10943391	chr6:77588124-77588125	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs552586137	chr6:77588128-77588129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143608584	chr6:77588158-77588159	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs7774476	chr6:77588185-77588186	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567697853	chr6:77588210-77588211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs386702864	chr6:77588223-77588224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs6939746	chr6:77588225-77588226	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs571452446	chr6:77588294-77588295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550224756	chr6:77588299-77588300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538783641	chr6:77588325-77588326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568288875	chr6:77588331-77588332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186924915	chr6:77588345-77588346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568581434	chr6:77588354-77588355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs368314189	chr6:77588359-77588360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs6940241	chr6:77588375-77588376	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs376188677	chr6:77588405-77588406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372558057	chr6:77588406-77588407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561430286	chr6:77588408-77588409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs148266441	chr6:77588413-77588414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs202138781	chr6:77588432-77588433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs371839126	chr6:77588434-77588435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs72222193	chr6:77588435-77588436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs56041432	chr6:77588436-77588437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs71546009	chr6:77588441-77588442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554130937	chr6:77588566-77588567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs372293454	chr6:77588567-77588568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558769217	chr6:77588583-77588584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35606433	chr6:77588585-77588586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs376126052	chr6:77588589-77588590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77192592	chr6:77588615-77588616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs116558047	chr6:77588638-77588639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201189877	chr6:77588654-77588655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145323405	chr6:77588657-77588658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372561126	chr6:77588658-77588659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565626652	chr6:77588668-77588669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9447859	chr6:77588681-77588682	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs139179730	chr6:77588685-77588686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563894605	chr6:77588731-77588732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79899675	chr6:77588742-77588743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs6940780	chr6:77588744-77588745	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs564402281	chr6:77588753-77588754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561262996	chr6:77588763-77588764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs528438303	chr6:77588785-77588786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs141457970	chr6:77588823-77588824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:210 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77585400-77590800	Weak transcription	Pancreas	Pancrea
2	chr6:77587800-77588200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:77590200-77591200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:77590800-77591400	Enhancers	Pancreas	Pancrea
5	chr6:77591200-77595200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:77591400-77596600	Weak transcription	Pancreas	Pancrea
7	chr6:77593400-77594200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:77593600-77594000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:77593800-77594000	Enhancers	Aorta	Aorta
10	chr6:77593800-77594000	Enhancers	Liver	Liver
11	chr6:77594000-77595400	Weak transcription	Aorta	Aorta
12	chr6:77594000-77595400	Weak transcription	Liver	Liver
13	chr6:77595200-77595400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:77595200-77595600	Enhancers	Ovary	ovary
15	chr6:77595200-77595600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:77595200-77595600	Enhancers	NHDF-Ad	bronchial
17	chr6:77595200-77595800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:77595200-77596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:77595200-77596200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:77595200-77596200	Enhancers	Osteobl	bone
21	chr6:77595200-77596800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:77595200-77597000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:77595400-77595600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:77595400-77595800	Enhancers	Aorta	Aorta
25	chr6:77595400-77595800	Enhancers	Liver	Liver
26	chr6:77595400-77595800	Enhancers	Psoas Muscle	Psoas
27	chr6:77595400-77595800	Enhancers	HMEC	breast
28	chr6:77595400-77596000	Enhancers	Adipose Nuclei	Adipose
29	chr6:77595600-77596000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:77595600-77596600	Weak transcription	Ovary	ovary
31	chr6:77595800-77596600	Weak transcription	Aorta	Aorta
32	chr6:77596600-77596800	Enhancers	Aorta	Aorta
33	chr6:77596600-77597000	Enhancers	Ovary	ovary
34	chr6:77596600-77597000	Enhancers	Pancreas	Pancrea
35	chr6:77603600-77604000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:77631800-77632200	ZNF genes & repeats	Ovary	ovary
37	chr6:77634000-77634200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:77634000-77634200	ZNF genes & repeats	Left Ventricle	heart
39	chr6:77634000-77634600	ZNF genes & repeats	Aorta	Aorta
40	chr6:77634600-77636200	Weak transcription	Aorta	Aorta
41	chr6:77636200-77636400	ZNF genes & repeats	Aorta	Aorta
42	chr6:77664600-77665000	Enhancers	Fetal Brain Male	brain
43	chr6:77664600-77665400	Enhancers	Brain Germinal Matrix	brain
44	chr6:77668400-77668600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:77668600-77669200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr6:77669000-77669200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:77675400-77676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:77681800-77682400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:77682000-77682400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:77682000-77682800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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