Variant report

Variant	nsv603807
Chromosome Location	chr6:77734250-77807794
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
2	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
3	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
4	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
5	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-12	chr6:77798170-77801007	NONHSAT113653
2	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
3	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes

No data

Extended variants
information (count: 2129 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:2129 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9341629	chr6:77734250-77734251	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs541474595	chr6:77734251-77734252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374249172	chr6:77734263-77734264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs180949266	chr6:77734296-77734297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577588631	chr6:77734297-77734298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544918717	chr6:77734351-77734352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563279826	chr6:77734352-77734353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs577721437	chr6:77734441-77734442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs34912257	chr6:77734484-77734485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs185172316	chr6:77734529-77734530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs9352426	chr6:77734561-77734562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs561129727	chr6:77734592-77734593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553411905	chr6:77734650-77734651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs370267439	chr6:77734697-77734698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375418981	chr6:77734698-77734699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377752570	chr6:77734699-77734700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374759793	chr6:77734700-77734701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs71546022	chr6:77734701-77734702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs70974639	chr6:77734730-77734731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs59275981	chr6:77734735-77734736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12527772	chr6:77734781-77734782	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs546625043	chr6:77734807-77734808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571174955	chr6:77734860-77734861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190261662	chr6:77734896-77734897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113219489	chr6:77734930-77734931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570390530	chr6:77734932-77734933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs12526385	chr6:77734938-77734939	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs140218082	chr6:77734945-77734946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200285029	chr6:77734947-77734948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs372370677	chr6:77734951-77734952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71968018	chr6:77734952-77734953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181431766	chr6:77734954-77734955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12200277	chr6:77734961-77734962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534830392	chr6:77735005-77735006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79433563	chr6:77735066-77735067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563123870	chr6:77735090-77735091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75078145	chr6:77735099-77735100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs538678092	chr6:77735100-77735101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531933967	chr6:77735133-77735134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs575826586	chr6:77735156-77735157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs16888423	chr6:77735157-77735158	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs575191852	chr6:77735161-77735162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs542864639	chr6:77735212-77735213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10806081	chr6:77735228-77735229	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs147768440	chr6:77735289-77735290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs373983168	chr6:77735290-77735291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572963636	chr6:77735344-77735345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185668545	chr6:77735355-77735356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs73459369	chr6:77735360-77735361	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs57305196	chr6:77735371-77735372	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:164 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77725200-77736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:77735600-77736000	Enhancers	Osteobl	bone
3	chr6:77736000-77736600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:77736000-77737000	Enhancers	Hela-S3	cervix
5	chr6:77736000-77740800	Weak transcription	Osteobl	bone
6	chr6:77736200-77736600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:77736600-77743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:77740400-77740800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:77740400-77741200	Enhancers	HSMM	muscle
10	chr6:77740600-77741200	Active TSS	Liver	Liver
11	chr6:77740800-77741200	Enhancers	HSMMtube	muscle
12	chr6:77740800-77741200	Enhancers	Osteobl	bone
13	chr6:77740800-77741400	Enhancers	HMEC	breast
14	chr6:77740800-77743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:77741000-77741200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:77741200-77742600	Weak transcription	HSMMtube	muscle
17	chr6:77741200-77743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:77741200-77743400	Weak transcription	HSMM	muscle
19	chr6:77741200-77743600	Weak transcription	Osteobl	bone
20	chr6:77741400-77743000	Weak transcription	HMEC	breast
21	chr6:77742600-77742800	Enhancers	HSMMtube	muscle
22	chr6:77742600-77746000	Weak transcription	Pancreas	Pancrea
23	chr6:77742800-77743200	Weak transcription	HSMMtube	muscle
24	chr6:77743000-77743400	Enhancers	NH-A	brain
25	chr6:77743000-77744200	Enhancers	HMEC	breast
26	chr6:77743200-77743600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:77743200-77743600	Enhancers	HSMMtube	muscle
28	chr6:77743200-77744000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:77743400-77743600	Active TSS	HSMM	muscle
30	chr6:77743400-77743800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:77743400-77744000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:77743400-77744000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:77743400-77744000	Flanking Active TSS	NH-A	brain
34	chr6:77743400-77744200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:77743400-77744200	Enhancers	Fetal Heart	heart
36	chr6:77743600-77743800	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr6:77743600-77743800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:77743600-77743800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:77743600-77743800	Enhancers	Hela-S3	cervix
40	chr6:77743600-77743800	Flanking Active TSS	HSMM	muscle
41	chr6:77743600-77744000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:77743600-77744000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:77743600-77744000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:77743600-77744000	Flanking Active TSS	HSMMtube	muscle
45	chr6:77743600-77744000	Flanking Active TSS	Osteobl	bone
46	chr6:77743600-77744200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:77743600-77744200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:77743600-77744200	Enhancers	HUVEC	blood vessel
49	chr6:77743600-77744400	Enhancers	NHEK	skin
50	chr6:77743800-77744000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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