Variant report

Variant	nsv605064
Chromosome Location	chr6:161728048-161728656
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539517965	chr6:161728065-161728066	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs373310357	chr6:161728080-161728081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372583380	chr6:161728105-161728106	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550819624	chr6:161728106-161728107	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs71544903	chr6:161728107-161728108	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79646251	chr6:161728118-161728119	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs71004038	chr6:161728120-161728121	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116826834	chr6:161728121-161728122	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs67215284	chr6:161728125-161728126	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547057788	chr6:161728134-161728135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs151224996	chr6:161728148-161728149	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs572859119	chr6:161728215-161728216	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs181190961	chr6:161728268-161728269	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550424896	chr6:161728279-161728280	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570018293	chr6:161728301-161728302	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186163453	chr6:161728330-161728331	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555582181	chr6:161728371-161728372	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190781052	chr6:161728404-161728405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs6933448	chr6:161728427-161728428	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs557850613	chr6:161728429-161728430	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs555630054	chr6:161728437-161728438	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369739474	chr6:161728467-161728468	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs544844856	chr6:161728481-161728482	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182959864	chr6:161728504-161728505	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112482924	chr6:161728570-161728571	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556446862	chr6:161728585-161728586	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs527514895	chr6:161728586-161728587	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571204274	chr6:161728590-161728591	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs79716943	chr6:161728596-161728597	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561894131	chr6:161728607-161728608	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527382073	chr6:161728627-161728628	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161722600-161735800	Weak transcription	Right Atrium	heart
2	chr6:161725600-161730200	Weak transcription	HMEC	breast
3	chr6:161726800-161729000	Enhancers	Brain Hippocampus Middle	brain
4	chr6:161727000-161728400	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:161727400-161728600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:161728000-161733800	Weak transcription	K562	blood
7	chr6:161728600-161728800	Enhancers	Brain Substantia Nigra	brain

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