Variant report

Variant	nsv605349
Chromosome Location	chr6:167813062-167833557
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:167823826..167826272-chr6:167829672..167831832,2	K562	blood:
2	chr6:167818746..167821496-chr6:167831177..167833070,2	K562	blood:
3	chr6:167813417..167815135-chr6:167817698..167819518,2	K562	blood:
4	chr6:167813417..167815135-chr6:167817698..167819518,2	K562	blood:
5	chr6:167662732..167663315-chr6:167819023..167819880,2	K562	blood:
6	chr6:167818746..167821496-chr6:167831177..167833070,2	K562	blood:
7	chr20:57615578..57617834-chr6:167831422..167833295,2	MCF-7	breast:
8	chr6:167823826..167826272-chr6:167829672..167831832,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-3	chr6:167825862-167825976	ucscGeneNc_uc003qvy_1
2	lnc-TCP10-3	chr6:167826637-167827774	ucscGeneNc_uc003qvy_1
3	lnc-TCP10-3	chr6:167823155-167825466	ucscGeneNc_uc003qvy_1
4	lnc-TCP10-2	chr6:167821589-167821728	ucscGeneNc_uc003qvx_1
5	lnc-TCP10-2	chr6:167810373-167814438	ucscGeneNc_uc003qvx_1
6	lnc-TCP10-2	chr6:167822441-167822752	ucscGeneNc_uc003qvx_1

No data

Variant related genes	Relation type
ENSG00000101166	chromatin interactions

Extended variants
information (count: 1006 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1006 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4709177	chr6:167813062-167813063	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs544615723	chr6:167813101-167813102	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs189740245	chr6:167813140-167813141	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs11753271	chr6:167813166-167813167	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs545582186	chr6:167813168-167813169	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs12196261	chr6:167813180-167813181	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs528271292	chr6:167813229-167813230	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs554787437	chr6:167813248-167813249	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs573049171	chr6:167813330-167813331	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs546257298	chr6:167813338-167813339	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs576094373	chr6:167813339-167813340	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs528864153	chr6:167813348-167813349	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs4709178	chr6:167813349-167813350	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs569441930	chr6:167813372-167813373	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs180880981	chr6:167813379-167813380	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs184930058	chr6:167813380-167813381	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs115393737	chr6:167813408-167813409	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs139759166	chr6:167813417-167813418	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs555549836	chr6:167813423-167813424	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs375734165	chr6:167813428-167813429	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs377688445	chr6:167813429-167813430	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs12196490	chr6:167813446-167813447	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs556558280	chr6:167813453-167813454	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs146309297	chr6:167813464-167813465	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs545643925	chr6:167813490-167813491	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs139472411	chr6:167813541-167813542	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs374819361	chr6:167813562-167813563	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs543875911	chr6:167813575-167813576	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs143488111	chr6:167813602-167813603	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs146755695	chr6:167813626-167813627	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs529027913	chr6:167813761-167813762	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs550303920	chr6:167813790-167813791	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs562458478	chr6:167813802-167813803	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs562247007	chr6:167813813-167813814	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs532968279	chr6:167813821-167813822	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs543612025	chr6:167813829-167813830	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs6905928	chr6:167813830-167813831	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs78988207	chr6:167813853-167813854	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs6906071	chr6:167813894-167813895	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs191048403	chr6:167813897-167813898	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs567642352	chr6:167813921-167813922	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs386708605	chr6:167813955-167813956	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs183228273	chr6:167813956-167813957	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs552940368	chr6:167813959-167813960	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs538672485	chr6:167813997-167813998	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs4504455	chr6:167814089-167814090	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs142609490	chr6:167814134-167814135	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs199747684	chr6:167814136-167814137	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs561964644	chr6:167814144-167814145	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs6926672	chr6:167814161-167814162	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167807600-167814400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:167810400-167814800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:167812400-167813200	Enhancers	HepG2	liver
4	chr6:167812800-167814200	Weak transcription	Fetal Intestine Large	intestine
5	chr6:167812800-167814600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:167812800-167815200	Weak transcription	Spleen	Spleen
7	chr6:167813600-167815400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:167814200-167815200	Enhancers	HepG2	liver
9	chr6:167814200-167816000	Enhancers	Fetal Intestine Large	intestine
10	chr6:167814400-167814600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:167814600-167815000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:167814600-167815800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:167814600-167816000	Enhancers	Fetal Intestine Small	intestine
14	chr6:167814800-167815800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:167815000-167815600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:167815000-167816000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:167815000-167817400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:167815200-167815400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:167815200-167815400	Enhancers	Spleen	Spleen
20	chr6:167815200-167815400	Flanking Active TSS	HepG2	liver
21	chr6:167815200-167815600	Enhancers	Colonic Mucosa	Colon
22	chr6:167815200-167815800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:167815200-167816000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:167815200-167816000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr6:167815400-167816000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:167815400-167816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:167815400-167820800	Bivalent Enhancer	HepG2	liver
28	chr6:167815600-167816000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:167815600-167816000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:167815800-167816200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:167815800-167820200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:167816000-167820400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:167816000-167820800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:167816200-167817400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:167817400-167817800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:167817800-167821200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:167818000-167818400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:167818400-167818600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:167818600-167820800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:167820200-167821400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:167820200-167821600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:167820400-167821600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:167820400-167822200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:167820800-167821400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:167820800-167821400	Flanking Bivalent TSS/Enh	HepG2	liver
46	chr6:167820800-167822200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:167821000-167821400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:167821000-167821400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:167821000-167821400	Enhancers	Pancreas	Pancrea
50	chr6:167821000-167821600	Enhancers	Cortex derived primary cultured neurospheres	brain

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