Variant report

Variant	nsv605365
Chromosome Location	chr6:167836708-167841508
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-3	chr6:167839733-167839819	ucscGeneNc_uc003qvy_1
2	lnc-TCP10-3	chr6:167839445-167839616	ucscGeneNc_uc003qvy_1
3	lnc-TCP10-3	chr6:167838864-167838906	ucscGeneNc_uc003qvy_1
4	lnc-TTLL2-2	chr6:167837702-167837948	NONHSAT116104
5	lnc-TTLL2-2	chr6:167840757-167840858	NONHSAT116104

Extended variants
information (count: 211 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:211 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144104544	chr6:167836714-167836715	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs140296583	chr6:167836748-167836749	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs199929973	chr6:167836765-167836766	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs367960849	chr6:167836835-167836836	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs548883221	chr6:167836883-167836884	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs200511348	chr6:167836892-167836893	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs200312292	chr6:167836896-167836897	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs79007252	chr6:167836901-167836902	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs71534973	chr6:167836914-167836915	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs113421638	chr6:167836973-167836974	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs376032834	chr6:167836978-167836979	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs201300950	chr6:167836983-167836984	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs201600586	chr6:167836984-167836985	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs181989814	chr6:167837076-167837077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199767520	chr6:167837172-167837173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576149999	chr6:167837225-167837226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186326943	chr6:167837319-167837320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs145314937	chr6:167837344-167837345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74213725	chr6:167837387-167837388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552693063	chr6:167837423-167837424	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs573977100	chr6:167837452-167837453	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs71534974	chr6:167837468-167837469	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs368395740	chr6:167837469-167837470	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs111592414	chr6:167837533-167837534	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs113595507	chr6:167837549-167837550	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs535124297	chr6:167837552-167837553	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs150859725	chr6:167837633-167837634	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs568459993	chr6:167837650-167837651	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs551423651	chr6:167837667-167837668	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs112121466	chr6:167837671-167837672	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs554877437	chr6:167837713-167837714	Weak transcription Enhancers Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs575817472	chr6:167837766-167837767	Weak transcription Enhancers Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs34814608	chr6:167837815-167837816	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
34	rs558332393	chr6:167837829-167837830	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
35	rs576489492	chr6:167837868-167837869	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
36	rs541135809	chr6:167837921-167837922	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
37	rs375707711	chr6:167837933-167837934	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
38	rs530657147	chr6:167838006-167838007	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs559055014	chr6:167838020-167838021	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs574399269	chr6:167838065-167838066	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs34496500	chr6:167838084-167838085	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs564010844	chr6:167838090-167838091	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs36030001	chr6:167838095-167838096	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs35666843	chr6:167838113-167838114	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs564681169	chr6:167838176-167838177	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs528546250	chr6:167838220-167838221	Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs181929378	chr6:167838260-167838261	Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs568342236	chr6:167838297-167838298	Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs369170685	chr6:167838313-167838314	Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs529322567	chr6:167838314-167838315	Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167829600-167841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:167829800-167842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:167830400-167840200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167834000-167839400	Weak transcription	Gastric	stomach
5	chr6:167834000-167846400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:167834800-167839400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:167835000-167839000	Weak transcription	Lung	lung
8	chr6:167835000-167845800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:167835200-167837600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:167835200-167840200	Weak transcription	Stomach Mucosa	stomach
11	chr6:167835200-167851800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:167835200-167856000	Weak transcription	Right Atrium	heart
13	chr6:167835400-167837400	Weak transcription	HepG2	liver
14	chr6:167835400-167837600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:167835400-167839200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:167835400-167839400	Weak transcription	Colonic Mucosa	Colon
17	chr6:167836400-167837000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:167836600-167836800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr6:167836800-167837600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:167837000-167839000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:167837400-167838000	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr6:167837400-167838000	Active TSS	HepG2	liver
23	chr6:167837600-167837800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:167837600-167837800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:167837600-167838000	Active TSS	Duodenum Mucosa	Duodenum
26	chr6:167837600-167838000	Enhancers	Placenta	Placenta
27	chr6:167837800-167838000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:167837800-167838000	Enhancers	Spleen	Spleen
29	chr6:167837800-167838400	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr6:167837800-167842200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:167838000-167838200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr6:167838000-167838600	Flanking Active TSS	HepG2	liver
33	chr6:167838000-167839000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:167838000-167839200	Weak transcription	Placenta	Placenta
35	chr6:167838000-167840200	Weak transcription	Spleen	Spleen
36	chr6:167838200-167838400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:167838400-167838600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:167838400-167839000	Weak transcription	Fetal Intestine Small	intestine
39	chr6:167838400-167839200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:167838600-167839800	Enhancers	HepG2	liver
41	chr6:167838600-167841800	Enhancers	Fetal Intestine Large	intestine
42	chr6:167839000-167839200	Enhancers	Lung	lung
43	chr6:167839000-167839400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:167839000-167840200	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:167839000-167840400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr6:167839000-167841400	Enhancers	Fetal Intestine Small	intestine
47	chr6:167839200-167839400	Enhancers	Fetal Stomach	stomach
48	chr6:167839200-167839400	Weak transcription	Lung	lung
49	chr6:167839200-167840400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr6:167839400-167839600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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