Variant report

Variant	nsv606039
Chromosome Location	chr7:7317590-7497676
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1368)
CpG islands
(count:184)
Chromatin interactive
region (count:91)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1368 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:7464097-7464338	HepG2	liver:	n/a	n/a
2	ARID3A	chr7:7478472-7478836	HepG2	liver:	n/a	n/a
3	ATF1	chr7:7464065-7464481	K562	blood:	n/a	n/a
4	ATF1	chr7:7344855-7345031	K562	blood:	n/a	n/a
5	ATF1	chr7:7491171-7491232	K562	blood:	n/a	n/a
6	ATF1	chr7:7369805-7369903	K562	blood:	n/a	n/a
7	ATF1	chr7:7376740-7376811	K562	blood:	n/a	n/a
8	ATF2	chr7:7392145-7392924	H1-hESC	embryonic stem cell:	n/a	chr7:7392484-7392495
9	ATF2	chr7:7361332-7361786	GM12878	blood:	n/a	n/a
10	ATF3	chr7:7478333-7478974	A549	lung:	n/a	n/a
11	BACH1	chr7:7458714-7458862	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr7:7392453-7392825	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCLAF1	chr7:7361281-7361798	GM12878	blood:	n/a	n/a
14	BHLHE40	chr7:7332331-7332638	K562	blood:	n/a	n/a
15	BHLHE40	chr7:7363058-7363128	HepG2	liver:	n/a	n/a
16	BHLHE40	chr7:7440697-7440745	A549	lung:	n/a	n/a
17	BHLHE40	chr7:7362908-7363336	GM12878	blood:	n/a	n/a
18	BHLHE40	chr7:7364477-7364520	GM12878	blood:	n/a	n/a
19	BRCA1	chr7:7464042-7464369	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr7:7464181-7464259	HepG2	liver:	n/a	n/a
21	BRCA1	chr7:7478442-7478892	Hela-S3	cervix:	n/a	n/a
22	CBX3	chr7:7478342-7479021	HCT-116	colon:	n/a	n/a
23	CBX3	chr7:7478353-7479081	HCT-116	colon:	n/a	n/a
24	CBX3	chr7:7488708-7488988	K562	blood:	n/a	n/a
25	CBX3	chr7:7455775-7456204	HCT-116	colon:	n/a	n/a
26	CBX3	chr7:7487828-7488056	K562	blood:	n/a	n/a
27	CEBPB	chr7:7408469-7408594	K562	blood:	n/a	chr7:7408500-7408511
28	CEBPB	chr7:7384218-7384568	K562	blood:	n/a	chr7:7384538-7384549 chr7:7384390-7384401
29	CEBPB	chr7:7478047-7478248	HepG2	liver:	n/a	n/a
30	CEBPB	chr7:7462392-7462592	HepG2	liver:	n/a	n/a
31	CEBPB	chr7:7384206-7384599	H1-hESC	embryonic stem cell:	n/a	chr7:7384538-7384549 chr7:7384390-7384401
32	CEBPB	chr7:7447928-7448459	MCF-7	breast:	n/a	n/a
33	CEBPB	chr7:7348950-7349150	K562	blood:	n/a	n/a
34	CEBPB	chr7:7348920-7349120	A549	lung:	n/a	n/a
35	CEBPB	chr7:7384192-7384697	MCF-7	breast:	n/a	chr7:7384538-7384549 chr7:7384390-7384401
36	CEBPB	chr7:7445393-7445569	HepG2	liver:	n/a	chr7:7445431-7445439 chr7:7445420-7445433 chr7:7445420-7445431 chr7:7445422-7445433
37	CEBPB	chr7:7408372-7408658	HepG2	liver:	n/a	chr7:7408500-7408511
38	CEBPB	chr7:7332303-7332671	K562	blood:	n/a	n/a
39	CEBPB	chr7:7384237-7384548	ECC-1	luminal epithelium:	n/a	chr7:7384390-7384401
40	CEBPB	chr7:7324274-7324303	HepG2	liver:	n/a	n/a
41	CEBPB	chr7:7478398-7479050	A549	lung:	n/a	n/a
42	CEBPB	chr7:7361292-7361745	ECC-1	luminal epithelium:	n/a	n/a
43	CEBPB	chr7:7420673-7420920	A549	lung:	n/a	chr7:7420765-7420776 chr7:7420763-7420774 chr7:7420765-7420774
44	CEBPB	chr7:7464132-7464268	HepG2	liver:	n/a	n/a
45	CEBPB	chr7:7478474-7478949	A549	lung:	n/a	n/a
46	CEBPB	chr7:7384224-7384529	K562	blood:	n/a	chr7:7384390-7384401
47	CEBPB	chr7:7384246-7384564	Hela-S3	cervix:	n/a	chr7:7384538-7384549 chr7:7384390-7384401
48	CEBPB	chr7:7384222-7384581	HepG2	liver:	n/a	chr7:7384538-7384549 chr7:7384390-7384401
49	CEBPB	chr7:7478329-7479033	A549	lung:	n/a	n/a
50	CEBPB	chr7:7372046-7372298	HepG2	liver:	n/a	chr7:7372136-7372147

(count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:7392557-7392607	GM12878	blood:	n/a
2	chr7:7392557-7392607	GM12878	blood:	n/a
3	chr7:7392557-7392607	T-47D	breast:	n/a
4	chr7:7392557-7392607	CMK	blood:	n/a
5	chr7:7474236-7474286	AG09319	gingival:	n/a
6	chr7:7474236-7474286	Jurkat	blood:	n/a
7	chr7:7474236-7474286	Caco-2	colon:	n/a
8	chr7:7392557-7392607	HCM	heart:	n/a
9	chr7:7478820-7478870	HCPEpiC	choroid plexus:	n/a
10	chr7:7392557-7392607	SK-N-SH	brain:	n/a
11	chr7:7478820-7478870	AG09319	gingival:	n/a
12	chr7:7392557-7392607	HMEC	breast:	n/a
13	chr7:7474236-7474286	GM06990	blood:	n/a
14	chr7:7478820-7478870	AoSMC	blood vessel:	n/a
15	chr7:7474236-7474286	NHDF-neo	bronchial:	n/a
16	chr7:7474236-7474286	HPAEpiC	pulmonary alveolar:	n/a
17	chr7:7478820-7478870	NHBE	bronchial:	n/a
18	chr7:7478820-7478870	T-47D	breast:	n/a
19	chr7:7474236-7474286	NT2-D1	testis:	n/a
20	chr7:7392557-7392607	ECC-1	luminal epithelium:	n/a
21	chr7:7474236-7474286	HRE	kidney:	n/a
22	chr7:7392557-7392607	MCF-7	breast:	n/a
23	chr7:7478820-7478870	HAEpiC	amniotic membrane:	n/a
24	chr7:7474236-7474286	HepG2	liver:	n/a
25	chr7:7474236-7474286	AG10803	skin:	n/a
26	chr7:7392557-7392607	HCF	heart:	n/a
27	chr7:7478820-7478870	Hela-S3	cervix:	n/a
28	chr7:7392557-7392607	AG09319	gingival:	n/a
29	chr7:7478820-7478870	NT2-D1	testis:	n/a
30	chr7:7392557-7392607	AG09309	skin:	n/a
31	chr7:7478820-7478870	HPAEpiC	pulmonary alveolar:	n/a
32	chr7:7478820-7478870	A549	lung:	n/a
33	chr7:7474236-7474286	ProgFib	skin:	n/a
34	chr7:7392557-7392607	HRPEpiC	eye:	n/a
35	chr7:7478820-7478870	AG04450	lung:	fetal
36	chr7:7392557-7392607	U87	brain:	n/a
37	chr7:7392557-7392607	HepG2	liver:	n/a
38	chr7:7474236-7474286	GM19239	blood:	n/a
39	chr7:7478820-7478870	HIPEpiC	eye:	n/a
40	chr7:7392557-7392607	BJ	skin:	n/a
41	chr7:7478820-7478870	HCM	heart:	n/a
42	chr7:7474236-7474286	HCT-116	colon:	n/a
43	chr7:7474236-7474286	SK-N-MC	brain:	n/a
44	chr7:7392557-7392607	PANC-1	pancreas:	n/a
45	chr7:7392557-7392607	ovcar-3	ovarian:	n/a
46	chr7:7474236-7474286	AoSMC	blood vessel:	n/a
47	chr7:7478820-7478870	GM12878	blood:	n/a
48	chr7:7478820-7478870	U87	brain:	n/a
49	chr7:7392557-7392607	SK-N-MC	brain:	n/a
50	chr7:7392557-7392607	HCPEpiC	choroid plexus:	n/a

(count:91 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr7:7486546..7488260-chr7:7605611..7607554,2	MCF-7	breast:
2	chr7:7361209..7361979-chr7:7394117..7394769,3	MCF-7	breast:
3	chr7:7473373..7475762-chr7:7594753..7597282,2	MCF-7	breast:
4	chr7:7484454..7487980-chr7:7492862..7495926,3	MCF-7	breast:
5	chr7:7463756..7464685-chr7:7580802..7582089,8	MCF-7	breast:
6	chr12:54069652..54070365-chr7:7364476..7364996,2	MCF-7	breast:
7	chr7:7395478..7398428-chr7:7405476..7407279,2	K562	blood:
8	chr7:7322726..7325575-chr7:7329256..7331422,2	MCF-7	breast:
9	chr7:7494613..7496722-chr7:7496760..7498364,2	K562	blood:
10	chr7:7385330..7388046-chr7:7388768..7391419,2	K562	blood:
11	chr7:7408553..7410116-chr7:7415727..7417970,2	K562	blood:
12	chr7:7457858..7459653-chr7:7472855..7475146,2	K562	blood:
13	chr7:7394315..7395000-chr7:7458752..7459656,3	MCF-7	breast:
14	chr7:7393627..7396092-chr7:7403638..7406248,2	MCF-7	breast:
15	chr7:7387784..7390020-chr7:7393795..7395424,3	K562	blood:
16	chr7:7142761..7143623-chr7:7463315..7464213,2	MCF-7	breast:
17	chr7:7342773..7344566-chr7:7352462..7355167,2	K562	blood:
18	chr7:7463681..7464442-chr7:7580757..7581561,4	K562	blood:
19	chr7:7463700..7464480-chr7:7580427..7581567,10	MCF-7	breast:
20	chr7:7220227..7222107-chr7:7381152..7382805,2	MCF-7	breast:
21	chr7:7446277..7450841-chr7:7451007..7455027,4	K562	blood:
22	chr7:7486591..7488164-chr7:7496470..7498337,2	K562	blood:
23	chr7:7348114..7350291-chr7:7350684..7352673,2	MCF-7	breast:
24	chr7:7381460..7384866-chr7:7386223..7388631,3	K562	blood:
25	chr7:7307417..7311172-chr7:7314692..7318495,3	K562	blood:
26	chr7:7464180..7464696-chr7:7579103..7579829,2	MCF-7	breast:
27	chr7:7385330..7388046-chr7:7388768..7391419,2	K562	blood:
28	chr7:7354935..7358098-chr7:7360992..7363611,4	K562	blood:
29	chr7:7322726..7325575-chr7:7329256..7331422,2	MCF-7	breast:
30	chr7:7467878..7469732-chr7:7578364..7581316,2	K562	blood:
31	chr7:7492127..7496167-chr7:7498814..7501004,3	K562	blood:
32	chr7:7354935..7358098-chr7:7360992..7363611,4	K562	blood:
33	chr7:7394315..7395000-chr7:7458752..7459656,3	MCF-7	breast:
34	chr7:7456425..7458799-chr7:7459595..7461119,2	K562	blood:
35	chr7:7342819..7345113-chr7:7345346..7349373,3	K562	blood:
36	chr7:7342773..7344566-chr7:7352462..7355167,2	K562	blood:
37	chr7:7445984..7447777-chr7:7451084..7453972,2	K562	blood:
38	chr7:7361062..7361815-chr7:7394117..7394640,2	MCF-7	breast:
39	chr7:7470914..7472671-chr7:7492916..7494632,2	MCF-7	breast:
40	chr7:7318004..7320924-chr7:7330269..7333078,2	K562	blood:
41	chr7:7486591..7488164-chr7:7496470..7498337,2	K562	blood:
42	chr7:7381460..7385807-chr7:7386068..7388631,3	K562	blood:
43	chr7:7465052..7465954-chr7:7580703..7581616,2	K562	blood:
44	chr7:7350418..7352862-chr7:7353431..7355937,2	MCF-7	breast:
45	chr7:7381460..7384866-chr7:7386223..7388631,3	K562	blood:
46	chr7:7446277..7450841-chr7:7451007..7455027,4	K562	blood:
47	chr7:7350418..7352862-chr7:7353431..7355937,2	MCF-7	breast:
48	chr7:7394187..7395000-chr7:7458752..7459656,4	MCF-7	breast:
49	chr20:52218363..52218883-chr7:7436125..7436645,2	MCF-7	breast:
50	chr7:7357978..7359775-chr7:7359913..7361736,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1GALT1-1	chr7:7317216-7317700	NR_108073
2	lnc-RPA3-5	chr7:7459516-7459941	NONHSAT119111
3	lnc-C1GALT1-3	chr7:7333139-7333511	NONHSAT119110
4	lnc-C1GALT1-1	chr7:7318538-7319295	NONHSAT119109
5	lnc-C1GALT1-1	chr7:7316875-7318401	NONHSAT119109
6	lnc-RPA3-5	chr7:7457263-7457558	NONHSAT119111

No data

Variant related genes	Relation type
ENSG00000236712	TF binding region
COL28A1	TF binding region
ENSG00000236712	CpG island
COL28A1	CpG island
ENSG00000201218	chromatin interactions
ENSG00000229970	chromatin interactions
ENSG00000003147	chromatin interactions
ENSG00000230825	chromatin interactions
ENSG00000164654	chromatin interactions
ENSG00000272894	chromatin interactions
ENSG00000135390	chromatin interactions
ENSG00000215018	chromatin interactions
ENSG00000244239	chromatin interactions

Extended variants
information (count: 8038 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:8038 , 50 per page) page: 1 2 3 4 5 6 7 ... 161

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2270080	chr7:7317590-7317591	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs192463541	chr7:7317598-7317599	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs1796121	chr7:7317605-7317606	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs367654673	chr7:7317636-7317637	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs76894669	chr7:7317639-7317640	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs577912136	chr7:7317643-7317644	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs113871024	chr7:7317645-7317646	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs550314017	chr7:7317648-7317649	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs79876724	chr7:7317653-7317654	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs572153917	chr7:7317654-7317655	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs184828803	chr7:7317661-7317662	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
12	rs535922687	chr7:7317673-7317674	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs554281984	chr7:7317709-7317710	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs141269554	chr7:7317720-7317721	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs545573474	chr7:7317781-7317782	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs189371363	chr7:7317786-7317787	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs201854038	chr7:7317823-7317824	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs565510934	chr7:7317839-7317840	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs538898353	chr7:7317843-7317844	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs577074132	chr7:7317844-7317845	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs545353088	chr7:7317856-7317857	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs563553584	chr7:7317892-7317893	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs575736343	chr7:7317916-7317917	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs1638210	chr7:7317960-7317961	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs150778497	chr7:7318016-7318017	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs528691585	chr7:7318047-7318048	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs550736859	chr7:7318086-7318087	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs546879734	chr7:7318129-7318130	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs562855982	chr7:7318135-7318136	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs565530844	chr7:7318191-7318192	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs79437917	chr7:7318195-7318196	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs143519098	chr7:7318196-7318197	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs555336385	chr7:7318217-7318218	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs532707938	chr7:7318228-7318229	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs10274612	chr7:7318239-7318240	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs551286733	chr7:7318248-7318249	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs7781147	chr7:7318265-7318266	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs535887285	chr7:7318274-7318275	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs7804546	chr7:7318310-7318311	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs566232947	chr7:7318316-7318317	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs112816678	chr7:7318325-7318326	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs566747157	chr7:7318353-7318354	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs115676845	chr7:7318358-7318359	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs138027549	chr7:7318369-7318370	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs577040948	chr7:7318417-7318418	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs537726288	chr7:7318432-7318433	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs556530705	chr7:7318438-7318439	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs534342737	chr7:7318440-7318441	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs17166019	chr7:7318467-7318468	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs543090807	chr7:7318532-7318533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	22286061	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
T-cell lymphomas	22341440	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:944 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7313600-7318800	Weak transcription	Esophagus	oesophagus
2	chr7:7316600-7319000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:7317200-7317800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:7317800-7318000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:7319000-7320400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:7320000-7332000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:7322400-7322600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:7322400-7322600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:7322600-7323400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:7322600-7332200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:7329800-7330800	Enhancers	HepG2	liver
12	chr7:7329800-7335000	Enhancers	Liver	Liver
13	chr7:7331400-7332000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:7331400-7332200	Enhancers	K562	blood
15	chr7:7331400-7335200	Enhancers	Fetal Intestine Large	intestine
16	chr7:7331600-7332000	Enhancers	GM12878-XiMat	blood
17	chr7:7331800-7332800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:7332000-7332400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:7332200-7332400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:7332200-7332400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:7332200-7332600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:7332200-7332600	Enhancers	Pancreas	Pancrea
23	chr7:7332200-7333200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:7332200-7333200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:7332200-7333200	Enhancers	Placenta	Placenta
26	chr7:7332400-7333400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:7332600-7335000	Enhancers	Fetal Intestine Small	intestine
28	chr7:7332800-7334200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:7333200-7333600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:7333400-7333800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:7333400-7334200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:7334400-7335000	Enhancers	HepG2	liver
33	chr7:7335000-7335800	Weak transcription	Fetal Intestine Small	intestine
34	chr7:7335800-7336000	Enhancers	Fetal Intestine Small	intestine
35	chr7:7338000-7338200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:7338200-7341000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:7340200-7340400	Enhancers	Gastric	stomach
38	chr7:7340400-7340600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:7340400-7344400	Weak transcription	Gastric	stomach
40	chr7:7340600-7343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:7340800-7345000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:7341000-7341800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:7341200-7341400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:7341400-7342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:7341800-7342000	Enhancers	Fetal Intestine Small	intestine
46	chr7:7341800-7342800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr7:7341800-7344800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:7342000-7342800	Weak transcription	Fetal Intestine Small	intestine
49	chr7:7342000-7343200	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr7:7342400-7342800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links