Variant report

Variant	nsv606309
Chromosome Location	chr7:15636352-15637565
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10950570	chr7:15636352-15636353	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572731152	chr7:15636353-15636354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192645301	chr7:15636354-15636355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs10950571	chr7:15636388-15636389	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs546756823	chr7:15636427-15636428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185031058	chr7:15636438-15636439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10226211	chr7:15636468-15636469	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs12538570	chr7:15636479-15636480	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs568868760	chr7:15636480-15636481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539922219	chr7:15636481-15636482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541502290	chr7:15636523-15636524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558018258	chr7:15636533-15636534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12538628	chr7:15636534-15636535	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs576155196	chr7:15636540-15636541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188044940	chr7:15636567-15636568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs10226348	chr7:15636592-15636593	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs555909020	chr7:15636620-15636621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs574409716	chr7:15636635-15636636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148482782	chr7:15636671-15636672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs10240218	chr7:15636742-15636743	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs67240818	chr7:15636767-15636768	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs547739606	chr7:15636771-15636772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564039610	chr7:15636810-15636811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372705057	chr7:15636814-15636815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs193053915	chr7:15636837-15636838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142650369	chr7:15636846-15636847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs151008098	chr7:15636850-15636851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs57982636	chr7:15636869-15636870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs397948882	chr7:15636878-15636879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140963016	chr7:15636888-15636889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10240374	chr7:15636909-15636910	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs550411424	chr7:15636910-15636911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs568804916	chr7:15636945-15636946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs533214979	chr7:15636953-15636954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs16878561	chr7:15637005-15637006	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs555759565	chr7:15637012-15637013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566882828	chr7:15637036-15637037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs3885136	chr7:15637051-15637052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62438988	chr7:15637061-15637062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs714658	chr7:15637073-15637074	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs147913317	chr7:15637114-15637115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs538541017	chr7:15637127-15637128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141617108	chr7:15637135-15637136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs184552756	chr7:15637145-15637146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs545508349	chr7:15637205-15637206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs60082931	chr7:15637213-15637214	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs572866026	chr7:15637216-15637217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540281038	chr7:15637219-15637220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189308980	chr7:15637244-15637245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs55857579	chr7:15637263-15637264	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
2	chr7:15637200-15639000	Weak transcription	Fetal Muscle Leg	muscle

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