Variant report

Variant	nsv607024
Chromosome Location	chr7:53602556-53628253
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEC61G-5	chr7:53626907-53627111	XLOC_006446

Extended variants
information (count: 245 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:245 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11769968	chr7:53602556-53602557	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs79370876	chr7:53602565-53602566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371825308	chr7:53602566-53602567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs574596576	chr7:53602593-53602594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535416034	chr7:53602612-53602613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs554111124	chr7:53602625-53602626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs60642882	chr7:53602656-53602657	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs539460444	chr7:53602684-53602685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs542117051	chr7:53602688-53602689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs11769940	chr7:53602693-53602694	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs576178372	chr7:53602714-53602715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537643139	chr7:53602753-53602754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79619669	chr7:53602759-53602760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551831323	chr7:53602843-53602844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187656661	chr7:53602928-53602929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192785952	chr7:53602960-53602961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573955412	chr7:53602998-53602999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148784986	chr7:53603073-53603074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184665333	chr7:53603076-53603077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563870770	chr7:53603084-53603085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141581685	chr7:53603103-53603104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs572028864	chr7:53603135-53603136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533437778	chr7:53603141-53603142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188730968	chr7:53603159-53603160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564166779	chr7:53603172-53603173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375088554	chr7:53603196-53603197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150500649	chr7:53603201-53603202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546234010	chr7:53603206-53603207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114902391	chr7:53603211-53603212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs10279984	chr7:53603254-53603255	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs192060642	chr7:53603282-53603283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs6593085	chr7:53603284-53603285	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs565643198	chr7:53603288-53603289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs184342547	chr7:53603315-53603316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551403738	chr7:53603317-53603318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548914015	chr7:53603345-53603346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569799884	chr7:53603353-53603354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs537178291	chr7:53603354-53603355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555852036	chr7:53603380-53603381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574118044	chr7:53603494-53603495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs57895970	chr7:53603501-53603502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs371002220	chr7:53603502-53603503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs398066884	chr7:53603525-53603526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs34816612	chr7:53603526-53603527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs199911982	chr7:53603527-53603528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189216305	chr7:53603610-53603611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79123236	chr7:53603620-53603621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs578261392	chr7:53603669-53603670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545803874	chr7:53603717-53603718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs544652948	chr7:53603725-53603726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Biliary cancer	19435499	CNVD
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastric cancer	24379144	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Non-small cell lung cancer	17643093	CNVD
Ovarian cancer	18182111	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17369134	CNVD
Barrett''s esophagus	18559552	CNVD
head and neck squamous cell carcinoma	16943533	CNVD
Anaplastic thyroid cancer	17079354	CNVD
Basal-like breast cancer	17875215	CNVD
Colorectal cancer	16882699	CNVD
Colorectal cancer	18794099	CNVD
Gastrointestinal stromal cancer	17643098	CNVD
Lung cancer	18381415	CNVD
Metastatic colorectal cancer	17664472	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	17673923	CNVD
Non-small cell lung cancer	17975165	CNVD
Non-small cell lung cancer	19622585	CNVD
Ovarian cancer	16607561	CNVD
Squamous cell cancer	19670535	CNVD
head and neck squamous cell carcinoma	16818711	CNVD
small cell lung cancer	18829487	CNVD
Breast cancer	17661082	CNVD
Adenocarcinoma	19260752	CNVD
Esophageal cancer	16575012	CNVD
Lung adenocarcinoma	19138956	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung adenocarcinoma	18258923	CNVD
Lung cancer	19138956	CNVD
Lung cancer	18379350	CNVD
Lung cancer	18258923	CNVD
Non-small cell lung cancer	18304967	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	19260752	CNVD
Non-small cell lung cancer	17079354	CNVD
Non-small cell lung cancer	18559607	CNVD
Rectal cancer	19506820	CNVD
Triple-negative breast cancer	18950515	CNVD
head and neck squamous cell carcinoma	18813952	CNVD
Non-small cell lung cancer	17504988	CNVD
Non-small cell lung cancer	16943533	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	17538160	CNVD
Colorectal cancer	19712476	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19671679	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
small cell lung cancer	20016488	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Cognitive impairment	21505072	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53598000-53605400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:53607800-53610000	Enhancers	Liver	Liver
3	chr7:53609400-53609800	Enhancers	Colon Smooth Muscle	Colon
4	chr7:53610400-53610800	Bivalent Enhancer	Fetal Brain Male	brain
5	chr7:53625600-53626000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:53625600-53626000	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links