Variant report

Variant	nsv607051
Chromosome Location	chr7:57285623-57287440
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF716-10	chr7:57285833-57285918	NONHSAT120826
2	lnc-ZNF716-10	chr7:57285590-57285649	NONHSAT120825

Extended variants
information (count: 51 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35625601	chr7:57285623-57285624	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs191679033	chr7:57285675-57285676	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs374809689	chr7:57285684-57285685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs569276184	chr7:57285694-57285695	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs185231309	chr7:57285744-57285745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs6966163	chr7:57285753-57285754	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs112736909	chr7:57285775-57285776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs566837269	chr7:57285787-57285788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs533995905	chr7:57285791-57285792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs34593540	chr7:57285792-57285793	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs570663683	chr7:57285819-57285820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs538156781	chr7:57285850-57285851	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs556430270	chr7:57285878-57285879	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs142552533	chr7:57285889-57285890	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs543897275	chr7:57285907-57285908	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs149894246	chr7:57285939-57285940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs190178196	chr7:57285984-57285985	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs572060699	chr7:57286008-57286009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs111247998	chr7:57286009-57286010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112193262	chr7:57286056-57286057	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs182327290	chr7:57286103-57286104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs149072084	chr7:57286108-57286109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs560392935	chr7:57286109-57286110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs543789280	chr7:57286148-57286149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs561815885	chr7:57286157-57286158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs115521924	chr7:57286160-57286161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs4364587	chr7:57286200-57286201	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs34281365	chr7:57286226-57286227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs560511686	chr7:57286283-57286284	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs3885711	chr7:57286338-57286339	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs12533909	chr7:57286364-57286365	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs552210728	chr7:57286368-57286369	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs143023115	chr7:57286370-57286371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs538045632	chr7:57286376-57286377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs531611238	chr7:57286382-57286383	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs376707621	chr7:57286414-57286415	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs568641687	chr7:57286462-57286463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs368780098	chr7:57286492-57286493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs185651295	chr7:57286525-57286526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs13241410	chr7:57286526-57286527	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs539583946	chr7:57286565-57286566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs189173633	chr7:57286569-57286570	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs148203399	chr7:57286570-57286571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs543629415	chr7:57286581-57286582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs35397213	chr7:57286593-57286594	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs573874657	chr7:57286659-57286660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs180857712	chr7:57286687-57286688	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs184975601	chr7:57286718-57286719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs13230674	chr7:57286779-57286780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs567539257	chr7:57286797-57286798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57284600-57286200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:57286200-57286800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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