Variant report

Variant	nsv608062
Chromosome Location	chr7:102800697-102801351
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102799119..102800765-chr7:102801413..102803528,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556825641	chr7:102800698-102800699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs376610624	chr7:102800713-102800714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs369049713	chr7:102800723-102800724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs372995990	chr7:102800724-102800725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376518933	chr7:102800743-102800744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370610193	chr7:102800744-102800745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs367609293	chr7:102800773-102800774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs375838198	chr7:102800783-102800784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377628917	chr7:102800784-102800785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374600711	chr7:102800793-102800794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368562930	chr7:102800804-102800805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs372147030	chr7:102800813-102800814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376460443	chr7:102800824-102800825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62484777	chr7:102800841-102800842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62484778	chr7:102800843-102800844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200083496	chr7:102800846-102800847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201197513	chr7:102800853-102800854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs563770821	chr7:102800861-102800862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528143490	chr7:102800862-102800863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201796581	chr7:102800863-102800864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200257902	chr7:102800864-102800865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369325991	chr7:102800873-102800874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201037208	chr7:102800882-102800883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199858219	chr7:102800884-102800885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376639631	chr7:102800893-102800894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368714654	chr7:102800901-102800902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373173954	chr7:102800903-102800904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548842140	chr7:102800904-102800905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200306143	chr7:102800924-102800925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201563877	chr7:102800933-102800934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373167044	chr7:102800942-102800943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377260199	chr7:102800943-102800944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113184559	chr7:102800944-102800945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373913380	chr7:102800953-102800954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141917358	chr7:102800960-102800961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370223197	chr7:102800964-102800965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531260182	chr7:102800995-102800996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373713566	chr7:102801002-102801003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368822972	chr7:102801003-102801004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62484779	chr7:102801013-102801014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs374288986	chr7:102801044-102801045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs368276781	chr7:102801053-102801054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372109977	chr7:102801061-102801062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376927090	chr7:102801073-102801074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369123843	chr7:102801081-102801082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs72603536	chr7:102801093-102801094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570879632	chr7:102801095-102801096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376401409	chr7:102801104-102801105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113525893	chr7:102801113-102801114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs373828799	chr7:102801124-102801125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	19907438	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Pancreatic cancer	17952125	CNVD
Glioblastoma multiforme	21510904	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102790200-102803200	Weak transcription	Gastric	stomach
2	chr7:102794800-102803200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:102800000-102802000	Weak transcription	K562	blood
4	chr7:102801200-102802400	Enhancers	Lung	lung

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