Variant report
Variant | nsv608356 |
---|---|
Chromosome Location | chr7:125695800-125709760 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs7803108 | chr7:125695800-125695801 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs140797523 | chr7:125695839-125695840 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs542731678 | chr7:125695878-125695879 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs561009556 | chr7:125695881-125695882 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs144632615 | chr7:125695890-125695891 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs7803256 | chr7:125695892-125695893 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs548967049 | chr7:125695901-125695902 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs147868894 | chr7:125695903-125695904 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs6467069 | chr7:125696037-125696038 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
10 | rs185235764 | chr7:125696041-125696042 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs566368561 | chr7:125696064-125696065 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs531464237 | chr7:125696116-125696117 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs533748130 | chr7:125696131-125696132 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs116456717 | chr7:125696142-125696143 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs1592386 | chr7:125696159-125696160 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
16 | rs537935415 | chr7:125696168-125696169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs140194014 | chr7:125696212-125696213 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs577725925 | chr7:125696223-125696224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs538558862 | chr7:125696243-125696244 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs145618592 | chr7:125696317-125696318 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs189714144 | chr7:125696372-125696373 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs113102550 | chr7:125696377-125696378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs377423276 | chr7:125696396-125696397 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs181190864 | chr7:125696402-125696403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs375539078 | chr7:125696404-125696405 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs186023736 | chr7:125696421-125696422 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs576172326 | chr7:125696428-125696429 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs1582261 | chr7:125696504-125696505 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
29 | rs190878390 | chr7:125696513-125696514 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs532713533 | chr7:125696542-125696543 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs151114175 | chr7:125696551-125696552 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs181936407 | chr7:125696576-125696577 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs530397814 | chr7:125696577-125696578 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs550696038 | chr7:125696598-125696599 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs117326610 | chr7:125696608-125696609 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs537947637 | chr7:125696619-125696620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs141069559 | chr7:125696635-125696636 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs149819653 | chr7:125696653-125696654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs538790204 | chr7:125696684-125696685 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs553666984 | chr7:125696685-125696686 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs372580268 | chr7:125696696-125696697 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs536136089 | chr7:125696708-125696709 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs566601802 | chr7:125696761-125696762 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs201726354 | chr7:125696824-125696825 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs72091461 | chr7:125696856-125696857 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs550013125 | chr7:125696862-125696863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs199789469 | chr7:125696866-125696867 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs200732111 | chr7:125696867-125696868 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs146289807 | chr7:125696870-125696871 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs377081256 | chr7:125696915-125696916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Seminomas | 18059402 | CNVD |
Testicular cancer | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Malaria | 21533027 | CNVD |
Melanoma | 18172304 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
head and neck squamous cell carcinoma | 19289630 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 21264507 | CNVD |
Shwachman-Diamond syndrome | 22934832 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Cutaneous malignant melanoma | 17690212 | CNVD |
Leukemia | 17361228 | CNVD |
Breast cancer | 16461572 | CNVD |
Peripheral t-cell lymphoma | 19118030 | CNVD |
Malignant melanoma | 17690212 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Prostate cancer | 16573809 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Biliary cancer | 19435499 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Prostate cancer | 23792589 | CNVD |
Adenocarcinoma | 21044232 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Non-small cell lung cancer | 19889201 | CNVD |
Acute myeloid leukemia | 18000384 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Metastatic melanoma | 18483359 | CNVD |
Autism | 18414403 | CNVD |
Autism | 19401682 | CNVD |
Autism | 19546859 | CNVD |
Schizophrenia | 19546859 | CNVD |
Tourette syndrome | 19546859 | CNVD |
Melanoma | 19188590 | CNVD |
Hepatocellular carcinoma | 16785998 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Breast cancer | 21509527 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 21635232 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
abnormal development | 18461090 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Autism | 20808228 | CNVD |
Autism | 19246517 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:125681400-125697600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr7:125682000-125696600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |