Variant report

Variant	nsv608999
Chromosome Location	chr7:150567741-150572382
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150568033..150570583-chr7:150684396..150686354,2	MCF-7	breast:
2	chr7:150572299..150575283-chr7:150617480..150621735,3	K562	blood:
3	chr7:150562856..150565769-chr7:150566346..150570295,3	K562	blood:
4	chr7:150570270..150572638-chr7:150573385..150575681,2	K562	blood:
5	chr7:150570280..150573172-chr7:150702825..150704695,2	K562	blood:
6	chr7:150564458..150567179-chr7:150567861..150571641,4	K562	blood:
7	chr7:150567773..150569879-chr7:150653213..150655593,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABP1-1	chr7:150568035-150568307	expRegAs_chr7_12357_+
2	lnc-ABP1-2	chr7:150568389-150569059	predAs_engstrom06_BM715580_1

No data

Extended variants
information (count: 173 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:173 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4266560	chr7:150567741-150567742	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537558858	chr7:150567892-150567893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs73165562	chr7:150567934-150567935	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs574114576	chr7:150567949-150567950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533508599	chr7:150567991-150567992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs554066103	chr7:150568028-150568029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs73468632	chr7:150568069-150568070	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs142308816	chr7:150568084-150568085	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs146115989	chr7:150568090-150568091	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs113344058	chr7:150568125-150568126	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs576263648	chr7:150568127-150568128	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs553750054	chr7:150568131-150568132	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs189821005	chr7:150568132-150568133	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs530153152	chr7:150568144-150568145	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs369140859	chr7:150568147-150568148	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs78209717	chr7:150568152-150568153	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs540243240	chr7:150568242-150568243	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs560888097	chr7:150568346-150568347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs532687534	chr7:150568390-150568391	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs182131375	chr7:150568397-150568398	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs187163621	chr7:150568417-150568418	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs11767097	chr7:150568518-150568519	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs190996353	chr7:150568530-150568531	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs138674730	chr7:150568548-150568549	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs149233747	chr7:150568583-150568584	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs542499289	chr7:150568600-150568601	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs563731320	chr7:150568609-150568610	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs570764041	chr7:150568644-150568645	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs539359967	chr7:150568648-150568649	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs556376024	chr7:150568767-150568768	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs576319796	chr7:150568803-150568804	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs144496394	chr7:150568832-150568833	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs575763090	chr7:150568845-150568846	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs11770409	chr7:150568865-150568866	ZNF genes & repeats Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs574983445	chr7:150568942-150568943	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs182148942	chr7:150569067-150569068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564585035	chr7:150569072-150569073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148019285	chr7:150569131-150569132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184936380	chr7:150569204-150569205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62492377	chr7:150569226-150569227	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs562804846	chr7:150569255-150569256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs141677449	chr7:150569267-150569268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs548350213	chr7:150569293-150569294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146133727	chr7:150569322-150569323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs386719407	chr7:150569325-150569326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73165563	chr7:150569326-150569327	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs569131756	chr7:150569338-150569339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140117871	chr7:150569387-150569388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs539390207	chr7:150569414-150569415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4725379	chr7:150569544-150569545	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150563000-150573800	Weak transcription	Fetal Stomach	stomach
2	chr7:150564200-150573800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:150565000-150573000	Weak transcription	Ovary	ovary
4	chr7:150567400-150573000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:150568800-150569000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:150569000-150576600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:150572000-150572200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:150572000-150574400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:150572200-150573800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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