Variant report

Variant	nsv609015
Chromosome Location	chr7:150809280-150812903
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:337)
CpG islands
(count:183)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:337 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:150811028-150811302	K562	blood:	n/a	n/a
2	ATF1	chr7:150810952-150811297	K562	blood:	n/a	n/a
3	ATF3	chr7:150810864-150811326	K562	blood:	n/a	n/a
4	BACH1	chr7:150810342-150810769	H1-hESC	embryonic stem cell:	n/a	n/a
5	BCL3	chr7:150810269-150810769	A549	lung:	n/a	n/a
6	BCL3	chr7:150810274-150811498	A549	lung:	n/a	n/a
7	BHLHE40	chr7:150811120-150811358	K562	blood:	n/a	n/a
8	CBX3	chr7:150810580-150811435	K562	blood:	n/a	n/a
9	CEBPD	chr7:150808833-150809300	K562	blood:	n/a	n/a
10	CTCF	chr7:150812588-150812675	Pancreas_OC	pancreas:	n/a	n/a
11	CTCF	chr7:150810380-150810530	HRE	kidney:	n/a	chr7:150810447-150810456
12	CTCF	chr7:150811921-150811994	Fibrobl	skin:	n/a	n/a
13	CTCF	chr7:150810340-150810490	AG09309	skin:	n/a	chr7:150810447-150810456
14	CTCF	chr7:150812460-150812610	GM12872	blood:	n/a	n/a
15	CTCF	chr7:150810860-150811010	HAc	cerebellar:	n/a	n/a
16	CTCF	chr7:150810880-150811030	HMEC	breast:	n/a	n/a
17	CTCF	chr7:150810400-150810550	HBMEC	blood vessel:	n/a	chr7:150810447-150810456
18	CTCF	chr7:150810400-150810550	AoAF	blood vessel:	n/a	chr7:150810447-150810456
19	CTCF	chr7:150810380-150810530	SK-N-SH_RA	brain:	n/a	chr7:150810447-150810456
20	CTCF	chr7:150810360-150810510	AG09319	gingival:	n/a	chr7:150810447-150810456
21	CTCF	chr7:150810900-150811050	HVMF	connective:	n/a	n/a
22	CTCF	chr7:150810360-150810510	HPF	lung:	n/a	chr7:150810447-150810456
23	CTCF	chr7:150812540-150812690	GM12866	blood:	n/a	n/a
24	CTCF	chr7:150811860-150812010	GM12869	blood:	n/a	n/a
25	CTCF	chr7:150812560-150812710	AG04450	lung:	n/a	n/a
26	CTCF	chr7:150810520-150810670	HAc	cerebellar:	n/a	n/a
27	CTCF	chr7:150812596-150812682	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr7:150812540-150812690	AG04450	lung:	n/a	n/a
29	CTCF	chr7:150810340-150810490	AG04450	lung:	n/a	chr7:150810447-150810456
30	CTCF	chr7:150810300-150810450	AoAF	blood vessel:	n/a	n/a
31	CTCF	chr7:150812780-150812930	HCM	heart:	n/a	n/a
32	CTCF	chr7:150811924-150812024	GM12891	blood:	n/a	n/a
33	CTCF	chr7:150810340-150810490	HUVEC	blood vessel:	n/a	chr7:150810447-150810456
34	CTCF	chr7:150812520-150812670	GM12868	blood:	n/a	n/a
35	CTCF	chr7:150812498-150812994	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr7:150811941-150812052	GM13977	blood:	n/a	n/a
37	CTCF	chr7:150810460-150810610	HRE	kidney:	n/a	n/a
38	CTCF	chr7:150811964-150812044	GM10248	blood:	n/a	n/a
39	CTCF	chr7:150812599-150812686	GM19238	blood:	n/a	n/a
40	CTCF	chr7:150810380-150810530	HRPEpiC	eye:	n/a	chr7:150810447-150810456
41	CTCF	chr7:150812540-150812690	HMEC	breast:	n/a	n/a
42	CTCF	chr7:150811940-150812090	GM12865	blood:	n/a	n/a
43	CTCF	chr7:150810420-150810570	HEEpiC	esophagus:	n/a	chr7:150810447-150810456
44	CTCF	chr7:150810920-150811070	AG10803	skin:	n/a	chr7:150811057-150811070
45	CTCF	chr7:150811840-150811990	GM12866	blood:	n/a	n/a
46	CTCF	chr7:150811911-150812038	IMR90	lung:	n/a	n/a
47	CTCF	chr7:150810300-150810450	BE2_C	brain:	n/a	n/a
48	CTCF	chr7:150810360-150810510	BJ	skin:	n/a	chr7:150810447-150810456
49	CTCF	chr7:150809738-150809801	GM10266	blood:	n/a	n/a
50	CTCF	chr7:150810360-150810510	SAEC	small airway:	n/a	chr7:150810447-150810456

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:150812282-150812332	AoSMC	blood vessel:	n/a
2	chr7:150811345-150811395	AoSMC	blood vessel:	n/a
3	chr7:150811345-150811395	PANC-1	pancreas:	n/a
4	chr7:150811775-150811825	BE2_C	brain:	n/a
5	chr7:150811345-150811395	H1-hESC	embryonic stem cell:	embryo
6	chr7:150811775-150811825	U87	brain:	n/a
7	chr7:150811775-150811825	HRE	kidney:	n/a
8	chr7:150811345-150811395	HCT-116	colon:	n/a
9	chr7:150811775-150811825	RPTEC	kidney:	n/a
10	chr7:150811775-150811825	PANC-1	pancreas:	n/a
11	chr7:150811345-150811395	GM19239	blood:	n/a
12	chr7:150811345-150811395	NHBE	bronchial:	n/a
13	chr7:150811775-150811825	Jurkat	blood:	n/a
14	chr7:150811345-150811395	HPAEpiC	pulmonary alveolar:	n/a
15	chr7:150811775-150811825	AoSMC	blood vessel:	n/a
16	chr7:150811775-150811825	AG09309	skin:	n/a
17	chr7:150812282-150812332	NHBE	bronchial:	n/a
18	chr7:150811345-150811395	Caco-2	colon:	n/a
19	chr7:150811775-150811825	ECC-1	luminal epithelium:	n/a
20	chr7:150811345-150811395	BJ	skin:	n/a
21	chr7:150811775-150811825	AG04450	lung:	fetal
22	chr7:150812282-150812332	PFSK-1	brain:	n/a
23	chr7:150812282-150812332	Caco-2	colon:	n/a
24	chr7:150811345-150811395	ECC-1	luminal epithelium:	n/a
25	chr7:150811775-150811825	Hela-S3	cervix:	n/a
26	chr7:150811345-150811395	CMK	blood:	n/a
27	chr7:150811775-150811825	AG10803	skin:	n/a
28	chr7:150811345-150811395	GM06990	blood:	n/a
29	chr7:150811775-150811825	HRCEpiC	kidney:	n/a
30	chr7:150811345-150811395	HMEC	breast:	n/a
31	chr7:150811775-150811825	GM06990	blood:	n/a
32	chr7:150811345-150811395	SKMC	muscle:	n/a
33	chr7:150811345-150811395	K562	blood:	n/a
34	chr7:150811345-150811395	HRCEpiC	kidney:	n/a
35	chr7:150812282-150812332	HUVEC	blood vessel:	n/a
36	chr7:150812282-150812332	HRPEpiC	eye:	n/a
37	chr7:150811775-150811825	MCF10A-Er-Src	breast:	n/a
38	chr7:150812282-150812332	ovcar-3	ovarian:	n/a
39	chr7:150812282-150812332	AG10803	skin:	n/a
40	chr7:150811775-150811825	SAEC	small airway:	n/a
41	chr7:150811345-150811395	SK-N-SH_RA	brain:	n/a
42	chr7:150811775-150811825	HepG2	liver:	n/a
43	chr7:150811775-150811825	NHDF-neo	bronchial:	n/a
44	chr7:150811345-150811395	ovcar-3	ovarian:	n/a
45	chr7:150811775-150811825	HEK293	kidney:	embryo
46	chr7:150811775-150811825	ovcar-3	ovarian:	n/a
47	chr7:150812282-150812332	HCF	heart:	n/a
48	chr7:150811775-150811825	GM19239	blood:	n/a
49	chr7:150812282-150812332	PrEC	prostate:	n/a
50	chr7:150812282-150812332	HCT-116	colon:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150809552..150813512-chr7:150971172..150974114,3	MCF-7	breast:
2	chr7:150807803..150810009-chr7:150811928..150814974,4	MCF-7	breast:
3	chr7:150805011..150809604-chr7:150809683..150814673,8	K562	blood:
4	chr7:150811800..150813328-chr7:150923060..150925511,2	MCF-7	breast:
5	chr7:150805011..150810412-chr7:150810806..150815520,8	K562	blood:
6	chr7:150807803..150810009-chr7:150811928..150814974,4	MCF-7	breast:
7	chr7:150756739..150757952-chr7:150807848..150809287,3	MCF-7	breast:
8	chr7:150805011..150809604-chr7:150809683..150814673,8	K562	blood:
9	chr7:150811813..150813371-chr7:150929013..150931225,2	MCF-7	breast:
10	chr7:150809563..150811680-chr7:150929692..150931212,2	MCF-7	breast:
11	chr7:150811889..150814867-chr7:150929281..150931083,2	MCF-7	breast:
12	chr7:150805011..150810412-chr7:150810806..150815520,8	K562	blood:
13	chr7:150811393..150813033-chr7:150871276..150873059,2	MCF-7	breast:
14	chr7:150810394..150811144-chr7:150820727..150821473,2	MCF-7	breast:
15	chr7:150065484..150068056-chr7:150811875..150813765,2	MCF-7	breast:

No data

Variant related genes	Relation type
AGAP3	TF binding region
AGAP3	CpG island
ENSG00000214022	chromatin interactions
ENSG00000033050	chromatin interactions
ENSG00000033100	chromatin interactions
ENSG00000196456	chromatin interactions
ENSG00000164889	chromatin interactions
ENSG00000164900	chromatin interactions
ENSG00000133612	chromatin interactions
ENSG00000082014	chromatin interactions

Extended variants
information (count: 110 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4725392	chr7:150809280-150809281	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs144245926	chr7:150809332-150809333	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs376730760	chr7:150809374-150809375	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs151198524	chr7:150809379-150809380	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs536320469	chr7:150809464-150809465	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs530587330	chr7:150809479-150809480	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs372118031	chr7:150809483-150809484	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs560610186	chr7:150809484-150809485	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs370795461	chr7:150809486-150809487	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs397723188	chr7:150809522-150809523	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs55869958	chr7:150809523-150809524	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs536212441	chr7:150809619-150809620	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs73169603	chr7:150809652-150809653	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs374494286	chr7:150809663-150809664	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs572929003	chr7:150809677-150809678	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs554983829	chr7:150809759-150809760	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs576651588	chr7:150809812-150809813	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs558378751	chr7:150809823-150809824	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs578237940	chr7:150809940-150809941	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs544135426	chr7:150809944-150809945	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs543642260	chr7:150809954-150809955	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs563639947	chr7:150809970-150809971	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs558717437	chr7:150810046-150810047	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs576967989	chr7:150810063-150810064	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs34581141	chr7:150810073-150810074	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs149929668	chr7:150810084-150810085	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs528624810	chr7:150810110-150810111	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs551281895	chr7:150810111-150810112	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs564749452	chr7:150810126-150810127	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs566478290	chr7:150810152-150810153	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs550485692	chr7:150810155-150810156	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs72617355	chr7:150810163-150810164	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs367779078	chr7:150810185-150810186	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs559755083	chr7:150810192-150810193	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs535856045	chr7:150810208-150810209	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs546614785	chr7:150810218-150810219	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs566442162	chr7:150810226-150810227	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs374498710	chr7:150810227-150810228	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs182413227	chr7:150810229-150810230	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs558341603	chr7:150810238-150810239	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs183492481	chr7:150810270-150810271	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs537711580	chr7:150810285-150810286	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs576700927	chr7:150810290-150810291	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs188322078	chr7:150810291-150810292	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs181199520	chr7:150810294-150810295	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs371728961	chr7:150810332-150810333	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs542644421	chr7:150810365-150810366	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs145120321	chr7:150810396-150810397	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs60244877	chr7:150810451-150810452	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs150896718	chr7:150810454-150810455	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:479 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150785000-150812000	Weak transcription	Aorta	Aorta
2	chr7:150789000-150815400	Weak transcription	GM12878-XiMat	blood
3	chr7:150792600-150810200	Weak transcription	Esophagus	oesophagus
4	chr7:150797400-150810200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:150799000-150811200	Weak transcription	Right Atrium	heart
6	chr7:150802200-150810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:150802200-150810200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:150802200-150810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:150802400-150810600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:150802600-150821400	Weak transcription	Hela-S3	cervix
11	chr7:150802800-150810200	Weak transcription	HUVEC	blood vessel
12	chr7:150803200-150810000	Weak transcription	NH-A	brain
13	chr7:150803800-150810400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:150804000-150810200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:150806200-150810400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:150806400-150810200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:150806800-150810200	Weak transcription	Osteobl	bone
18	chr7:150807000-150810400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:150807200-150809600	Enhancers	Stomach Mucosa	stomach
20	chr7:150807200-150810600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:150807400-150809800	Enhancers	Fetal Heart	heart
22	chr7:150807400-150811000	Enhancers	Pancreas	Pancrea
23	chr7:150808000-150810200	Weak transcription	HSMMtube	muscle
24	chr7:150808000-150811000	Weak transcription	Colonic Mucosa	Colon
25	chr7:150808000-150811200	Enhancers	Gastric	stomach
26	chr7:150808000-150814600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:150808200-150810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:150808200-150810200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:150808200-150810600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:150808200-150810600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:150808200-150810600	Weak transcription	NHDF-Ad	bronchial
32	chr7:150808200-150811000	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:150808200-150811000	Weak transcription	Left Ventricle	heart
34	chr7:150808200-150811600	Weak transcription	Ovary	ovary
35	chr7:150808200-150813600	Weak transcription	Liver	Liver
36	chr7:150808200-150815200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:150808400-150809600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:150808400-150809800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:150808400-150809800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:150808400-150810600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:150808400-150810600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:150808400-150810800	Genic enhancers	K562	blood
43	chr7:150808400-150811200	Weak transcription	Adipose Nuclei	Adipose
44	chr7:150808400-150812800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:150808600-150809400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:150808600-150809600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:150808600-150810000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:150808600-150810000	Weak transcription	HMEC	breast
49	chr7:150808600-150810000	Weak transcription	NHEK	skin
50	chr7:150808600-150810000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links