Variant report
Variant | nsv609731 |
---|---|
Chromosome Location | chr8:3181378-3182062 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs156071 | chr8:3181378-3181379 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs200121626 | chr8:3181384-3181385 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs374475958 | chr8:3181392-3181393 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs146647608 | chr8:3181400-3181401 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs201194359 | chr8:3181416-3181417 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs75216556 | chr8:3181423-3181424 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs371271721 | chr8:3181431-3181432 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs577968038 | chr8:3181433-3181434 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs77130980 | chr8:3181440-3181441 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs537383144 | chr8:3181443-3181444 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs79330555 | chr8:3181450-3181451 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs75755353 | chr8:3181452-3181453 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs5888962 | chr8:3181455-3181456 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs79812545 | chr8:3181457-3181458 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs374216148 | chr8:3181462-3181463 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs533146608 | chr8:3181471-3181472 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs368034848 | chr8:3181490-3181491 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs372172290 | chr8:3181492-3181493 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs111336467 | chr8:3181494-3181495 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs551044448 | chr8:3181501-3181502 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs201343296 | chr8:3181502-3181503 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs112360870 | chr8:3181503-3181504 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs112761323 | chr8:3181511-3181512 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs542689765 | chr8:3181513-3181514 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs113059239 | chr8:3181521-3181522 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs35998459 | chr8:3181526-3181527 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs113641381 | chr8:3181527-3181528 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs202209876 | chr8:3181533-3181534 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs561399631 | chr8:3181534-3181535 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs200569867 | chr8:3181543-3181544 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs201484656 | chr8:3181566-3181567 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs528580939 | chr8:3181572-3181573 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs113842215 | chr8:3181573-3181574 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs61408962 | chr8:3181574-3181575 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs536113125 | chr8:3181575-3181576 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs71502954 | chr8:3181583-3181584 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs571500230 | chr8:3181586-3181587 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs532615695 | chr8:3181591-3181592 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs371433297 | chr8:3181593-3181594 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs76451761 | chr8:3181595-3181596 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs550177303 | chr8:3181597-3181598 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs200627725 | chr8:3181600-3181601 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs550843156 | chr8:3181610-3181611 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs569486363 | chr8:3181611-3181612 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs13274025 | chr8:3181613-3181614 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs536789976 | chr8:3181614-3181615 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs537019060 | chr8:3181624-3181625 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs548727896 | chr8:3181627-3181628 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs188563078 | chr8:3181628-3181629 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs2406353 | chr8:3181631-3181632 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Prostate cancer | 16573809 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
abnormal development | 18461090 | CNVD |
Crohn''s disease | 19220326 | CNVD |
Psoriasis | 19220326 | CNVD |
Prostate cancer | 21965145 | CNVD |
Prostate cancer | 18515986 | CNVD |
Chronic obstructive pulmonary disease | 20378733 | CNVD |
Autism | 18414403 | CNVD |
Cancer | 21183584 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Breast cancer | 17603634 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Cervical cancer | 17311676 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Schizophrenia | 20877625 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Breast cancer | 17001317 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Heart disease | 21282601 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Colorectal cancer | 21297112 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Breast cancer | 17133270 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Breast cancer | 17393978 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Breast cancer | 20837533 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 22429812 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Breast cancer | 21264507 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Oral cancer | 21386901 | CNVD |
Prostate cancer | 21088497 | CNVD |
Breast cancer | 20940404 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Gastric cancer | 17167181 | CNVD |
Prostate cancer | 16705090 | CNVD |
8p-syndrome | 17576883 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Lung adenocarcinoma | 19525976 | CNVD |
Lung cancer | 19525976 | CNVD |
Prostate cancer | 17245344 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Cancer | 16751803 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 21785460 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Breast cancer | 21509527 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Epilepsy | 22083797 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21858162 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Autism | 22495311 | CNVD |
Congenital diaphragmatic hernia | 21064195 | CNVD |
Ovarian cancer | 22355333 | CNVD |
Breast cancer | 21364760 | CNVD |
Cancer | 20164920 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Esophageal squamous carcinoma | 18405350 | CNVD |
Prostate cancer | 17217626 | CNVD |
Developmental delay | 19128483 | CNVD |
Neuroticism | 17667963 | CNVD |
Leukoplakia | 24403051 | CNVD |
Intellectual disability | 22045946 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Breast cancer | 16608533 | CNVD |
Seminomas | 18059402 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Schizophrenia | 19805367 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Colorectal cancer | 22014273 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Schizophrenia | 23813976 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:3180000-3182000 | Enhancers | Primary B cells from peripheral blood | blood |