Variant report

Variant	nsv609856
Chromosome Location	chr8:4400199-4413282
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:4091582..4092324-chr8:4399511..4400398,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 125 )

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536674129	chr8:4401210-4401211	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs61552276	chr8:4401220-4401221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs59358796	chr8:4401221-4401222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs370438322	chr8:4401226-4401227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs140144943	chr8:4401236-4401237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs11776307	chr8:4401247-4401248	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs534364016	chr8:4401255-4401256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76011471	chr8:4401273-4401274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs577416378	chr8:4401296-4401297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73498624	chr8:4401301-4401302	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs11776338	chr8:4401313-4401314	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs184892666	chr8:4401353-4401354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189372023	chr8:4401357-4401358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs541439024	chr8:4401364-4401365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559774358	chr8:4401415-4401416	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs76292275	chr8:4401416-4401417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs13276912	chr8:4401430-4401431	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs564116522	chr8:4401435-4401436	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs531567921	chr8:4401437-4401438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181781012	chr8:4401450-4401451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs151028569	chr8:4401465-4401466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs73498627	chr8:4401469-4401470	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs190615763	chr8:4401474-4401475	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs566912687	chr8:4401497-4401498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs534034389	chr8:4401499-4401500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs61291918	chr8:4401509-4401510	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs140943460	chr8:4401521-4401522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs149794057	chr8:4401527-4401528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556404211	chr8:4401539-4401540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs183381379	chr8:4401547-4401548	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs62484746	chr8:4401564-4401565	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs186741312	chr8:4401574-4401575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559889016	chr8:4401575-4401576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190980676	chr8:4401577-4401578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs372350647	chr8:4401587-4401588	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs545565457	chr8:4401599-4401600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145268947	chr8:4410422-4410423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs573340819	chr8:4410440-4410441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs73182990	chr8:4410472-4410473	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs147216668	chr8:4410504-4410505	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs548775733	chr8:4410506-4410507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs560655094	chr8:4410508-4410509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs140568162	chr8:4410513-4410514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs7357469	chr8:4410514-4410515	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs372769690	chr8:4410521-4410522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs571157433	chr8:4410532-4410533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs538533988	chr8:4410545-4410546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs550884804	chr8:4410550-4410551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs540132130	chr8:4410596-4410597	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs79350315	chr8:4410623-4410624	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:125)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	22014273	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Chronic myeloid leukemia	21384125	CNVD
Tetralogy of Fallot	22912587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4401200-4401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:4410400-4411000	Enhancers	Brain Germinal Matrix	brain
3	chr8:4411200-4411600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links