Variant report

Variant	nsv609882
Chromosome Location	chr8:4583406-4611924
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2455 )
Associated
traits (count: 126 )

Variant overlapped rSNPs/rCNVs (count:2455 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs293873	chr8:4583406-4583407	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189600681	chr8:4583409-4583410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs561194213	chr8:4583418-4583419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528653053	chr8:4583424-4583425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528450442	chr8:4583432-4583433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548601491	chr8:4583433-4583434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs79103394	chr8:4583435-4583436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148817662	chr8:4583466-4583467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143462336	chr8:4583495-4583496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373908128	chr8:4583521-4583522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs181365132	chr8:4583525-4583526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568985772	chr8:4583543-4583544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557413632	chr8:4583553-4583554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148004458	chr8:4583557-4583558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569221042	chr8:4583574-4583575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs184470033	chr8:4583604-4583605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533730717	chr8:4583611-4583612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558839806	chr8:4583626-4583627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs36048542	chr8:4583633-4583634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550821948	chr8:4583648-4583649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539821610	chr8:4583658-4583659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs529337851	chr8:4583665-4583666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542661208	chr8:4583666-4583667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569802207	chr8:4583673-4583674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs116449501	chr8:4583694-4583695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs140802973	chr8:4583695-4583696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563493607	chr8:4583697-4583698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144680383	chr8:4583748-4583749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542753954	chr8:4583749-4583750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs386721368	chr8:4583751-4583752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs571897850	chr8:4583753-4583754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371383349	chr8:4583764-4583765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs565590091	chr8:4583779-4583780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138382625	chr8:4583793-4583794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs180727724	chr8:4583805-4583806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs186358307	chr8:4583806-4583807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536242356	chr8:4583808-4583809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375914961	chr8:4583813-4583814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527975383	chr8:4583817-4583818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs142975260	chr8:4583828-4583829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs146144750	chr8:4583829-4583830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs534012651	chr8:4583831-4583832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558775861	chr8:4583834-4583835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs138961947	chr8:4583855-4583856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372618181	chr8:4583856-4583857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201333738	chr8:4583873-4583874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375898269	chr8:4583905-4583906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs115264590	chr8:4583918-4583919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs899145	chr8:4583927-4583928	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs149346523	chr8:4583945-4583946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:126)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	22014273	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Chronic myeloid leukemia	21384125	CNVD
Tetralogy of Fallot	22912587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4570600-4586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:4586800-4587800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:4587800-4592600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:4592400-4592800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:4592400-4593200	Enhancers	Colon Smooth Muscle	Colon
6	chr8:4592600-4593200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:4593200-4593600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:4593600-4593800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:4593800-4616600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:4597200-4597600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:4597200-4598000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:4610600-4612600	Enhancers	Fetal Brain Male	brain
13	chr8:4611000-4611400	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links