Variant report

Variant	nsv609986
Chromosome Location	chr8:6065543-6084048
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6079332..6082540-chr8:6084426..6086508,3	K562	blood:
2	chr8:6080157..6081666-chr8:6091415..6093477,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANGPT2-11	chr8:6082847-6083064	NONHSAT124769

Extended variants
information (count: 652 )
Associated
traits (count: 121 )

Variant overlapped rSNPs/rCNVs (count:652 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6980531	chr8:6065543-6065544	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs541528095	chr8:6065550-6065551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561803028	chr8:6065559-6065560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs572250104	chr8:6065569-6065570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs527938384	chr8:6065570-6065571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs541278056	chr8:6065613-6065614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs11779303	chr8:6065615-6065616	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs533038430	chr8:6065629-6065630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs73516051	chr8:6065637-6065638	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs59146209	chr8:6065655-6065656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs144450488	chr8:6065667-6065668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs549186114	chr8:6065672-6065673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565882681	chr8:6065678-6065679	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs150637126	chr8:6065696-6065697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs551516489	chr8:6065761-6065762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs571506911	chr8:6065777-6065778	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs374593690	chr8:6065793-6065794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs537316334	chr8:6065794-6065795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs557648147	chr8:6065827-6065828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs575933838	chr8:6065837-6065838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs112740824	chr8:6065838-6065839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs555500590	chr8:6065847-6065848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs145711600	chr8:6065852-6065853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs541137195	chr8:6065858-6065859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs116147326	chr8:6065895-6065896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs141397613	chr8:6065902-6065903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs190611533	chr8:6065927-6065928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs369216799	chr8:6065928-6065929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs367752591	chr8:6065934-6065935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs543319161	chr8:6065959-6065960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563627284	chr8:6066008-6066009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs17076234	chr8:6066009-6066010	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs76087175	chr8:6066031-6066032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs199968314	chr8:6066055-6066056	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs397689569	chr8:6066068-6066069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs559332144	chr8:6066071-6066072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs182900126	chr8:6066084-6066085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs58601971	chr8:6066096-6066097	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs145292830	chr8:6066114-6066115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs147654394	chr8:6066118-6066119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs557833298	chr8:6066120-6066121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs550472170	chr8:6066122-6066123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs567999244	chr8:6066129-6066130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs535098984	chr8:6066160-6066161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs572963455	chr8:6066173-6066174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs10099025	chr8:6066174-6066175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565683486	chr8:6066175-6066176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs534679365	chr8:6066197-6066198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs557904029	chr8:6066208-6066209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs186233213	chr8:6066223-6066224	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:121)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	21364760	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Cancer	20164919	CNVD
Medulloblastoma	16783165	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Melanoma	20688739	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6065400-6065800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:6065400-6066200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:6065400-6067000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:6069000-6070600	Weak transcription	Right Atrium	heart
5	chr8:6069600-6072800	Enhancers	Fetal Brain Male	brain
6	chr8:6070000-6071400	Enhancers	Fetal Brain Female	brain
7	chr8:6070400-6070600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:6070400-6070600	Bivalent Enhancer	Hela-S3	cervix
9	chr8:6070600-6070800	Enhancers	Right Atrium	heart
10	chr8:6070600-6071200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:6071400-6071800	Weak transcription	Fetal Brain Female	brain
12	chr8:6071800-6072200	Enhancers	Fetal Brain Female	brain
13	chr8:6080800-6081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:6080800-6082000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:6081400-6087800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:6081800-6082800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:6082000-6082400	Enhancers	Fetal Brain Male	brain
18	chr8:6082400-6084600	Weak transcription	Fetal Brain Male	brain

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