Variant report

Variant	nsv610178
Chromosome Location	chr8:8341105-8415810
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1296)
CpG islands
(count:245)
Chromatin interactive
region (count:51)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1296 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:8388381-8388665	HepG2	liver:	n/a	n/a
2	ARID3A	chr8:8340777-8341233	HepG2	liver:	n/a	n/a
3	ATF2	chr8:8407452-8407867	GM12878	blood:	n/a	n/a
4	ATF2	chr8:8350224-8351026	GM12878	blood:	n/a	n/a
5	ATF2	chr8:8402416-8402973	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr8:8350336-8351041	GM12878	blood:	n/a	n/a
7	ATF2	chr8:8353515-8354183	GM12878	blood:	n/a	n/a
8	ATF2	chr8:8344838-8345446	GM12878	blood:	n/a	n/a
9	ATF2	chr8:8353476-8354189	GM12878	blood:	n/a	n/a
10	ATF2	chr8:8375795-8376206	GM12878	blood:	n/a	n/a
11	BACH1	chr8:8402290-8402821	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr8:8376012-8376015	K562	blood:	n/a	n/a
13	BATF	chr8:8407563-8407870	GM12878	blood:	n/a	n/a
14	BATF	chr8:8375727-8376104	GM12878	blood:	n/a	chr8:8375970-8375980
15	BATF	chr8:8345103-8345453	GM12878	blood:	n/a	n/a
16	BATF	chr8:8353637-8354083	GM12878	blood:	n/a	chr8:8353733-8353742
17	BATF	chr8:8407590-8407858	GM12878	blood:	n/a	n/a
18	BATF	chr8:8350565-8350887	GM12878	blood:	n/a	n/a
19	BATF	chr8:8341003-8341212	GM12878	blood:	n/a	n/a
20	BATF	chr8:8353652-8354011	GM12878	blood:	n/a	chr8:8353733-8353742
21	BATF	chr8:8375837-8376156	GM12878	blood:	n/a	chr8:8375970-8375980
22	BATF	chr8:8379084-8379408	GM12878	blood:	n/a	chr8:8379243-8379253 chr8:8379242-8379253
23	BCL11A	chr8:8353657-8354012	GM12878	blood:	n/a	chr8:8353725-8353734
24	BCL11A	chr8:8353622-8354069	GM12878	blood:	n/a	chr8:8353725-8353734
25	BCL3	chr8:8353620-8353935	GM12878	blood:	n/a	chr8:8353725-8353734
26	BCL3	chr8:8353689-8353967	GM12878	blood:	n/a	chr8:8353725-8353734
27	BCL3	chr8:8340375-8341335	A549	lung:	n/a	chr8:8340757-8340766 chr8:8340756-8340765
28	BCLAF1	chr8:8353515-8354310	GM12878	blood:	n/a	chr8:8353725-8353734
29	BCLAF1	chr8:8350255-8351074	GM12878	blood:	n/a	n/a
30	BCLAF1	chr8:8353668-8354188	GM12878	blood:	n/a	chr8:8353725-8353734
31	BCLAF1	chr8:8412669-8413041	GM12878	blood:	n/a	n/a
32	BHLHE40	chr8:8353598-8354014	GM12878	blood:	n/a	n/a
33	BHLHE40	chr8:8350545-8350910	GM12878	blood:	n/a	n/a
34	BRCA1	chr8:8404384-8404434	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr8:8356667-8357000	A549	lung:	n/a	n/a
36	CEBPB	chr8:8340194-8341265	IMR90	lung:	n/a	n/a
37	CEBPB	chr8:8377956-8378222	A549	lung:	n/a	chr8:8378071-8378082 chr8:8378037-8378048 chr8:8378037-8378050
38	CEBPB	chr8:8340683-8341263	HepG2	liver:	n/a	n/a
39	CEBPB	chr8:8360238-8360336	IMR90	lung:	n/a	n/a
40	CEBPB	chr8:8356661-8356819	HepG2	liver:	n/a	n/a
41	CEBPB	chr8:8377912-8378228	HepG2	liver:	n/a	chr8:8378071-8378082 chr8:8378037-8378048 chr8:8378037-8378050
42	CEBPB	chr8:8394988-8395620	HCT-116	colon:	n/a	n/a
43	CEBPB	chr8:8360168-8360478	HepG2	liver:	n/a	n/a
44	CEBPB	chr8:8356558-8356982	HepG2	liver:	n/a	n/a
45	CEBPB	chr8:8394971-8395682	HCT-116	colon:	n/a	n/a
46	CEBPB	chr8:8394837-8395737	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr8:8395145-8395482	MCF-7	breast:	n/a	n/a
48	CEBPB	chr8:8377915-8378395	IMR90	lung:	n/a	chr8:8378071-8378082 chr8:8378037-8378048 chr8:8378037-8378050
49	CEBPB	chr8:8344217-8344342	A549	lung:	n/a	n/a
50	CEBPB	chr8:8356588-8356980	IMR90	lung:	n/a	n/a

(count:245 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:8388047-8388097	H1-hESC	embryonic stem cell:	embryo
2	chr8:8388047-8388097	H1-hESC	embryonic stem cell:	embryo
3	chr8:8402366-8402416	HMEC	breast:	n/a
4	chr8:8412440-8412490	HUVEC	blood vessel:	n/a
5	chr8:8412440-8412490	NHDF-neo	bronchial:	n/a
6	chr8:8388047-8388097	HepG2	liver:	n/a
7	chr8:8412440-8412490	T-47D	breast:	n/a
8	chr8:8341955-8342005	HL-60	blood:	n/a
9	chr8:8402366-8402416	HCT-116	colon:	n/a
10	chr8:8388047-8388097	HNPCEpiC	eye:	n/a
11	chr8:8388047-8388097	HIPEpiC	eye:	n/a
12	chr8:8341955-8342005	GM19239	blood:	n/a
13	chr8:8388047-8388097	HL-60	blood:	n/a
14	chr8:8402366-8402416	MCF-7	breast:	n/a
15	chr8:8388047-8388097	SK-N-SH_RA	brain:	n/a
16	chr8:8341955-8342005	IMR90	lung:	fetal
17	chr8:8388047-8388097	HRCEpiC	kidney:	n/a
18	chr8:8402366-8402416	K562	blood:	n/a
19	chr8:8402366-8402416	NB4	blood:	n/a
20	chr8:8341955-8342005	Hela-S3	cervix:	n/a
21	chr8:8402366-8402416	HPAEpiC	pulmonary alveolar:	n/a
22	chr8:8388047-8388097	HEEpiC	esophagus:	n/a
23	chr8:8412440-8412490	SK-N-SH	brain:	n/a
24	chr8:8388047-8388097	GM12892	blood:	n/a
25	chr8:8402366-8402416	HCM	heart:	n/a
26	chr8:8341955-8342005	GM12878	blood:	n/a
27	chr8:8412440-8412490	A549	lung:	n/a
28	chr8:8388047-8388097	SKMC	muscle:	n/a
29	chr8:8388047-8388097	BE2_C	brain:	n/a
30	chr8:8412440-8412490	AG04450	lung:	fetal
31	chr8:8402366-8402416	MCF10A-Er-Src	breast:	n/a
32	chr8:8388047-8388097	HEK293	kidney:	embryo
33	chr8:8388047-8388097	AG04450	lung:	fetal
34	chr8:8412440-8412490	HepG2	liver:	n/a
35	chr8:8412440-8412490	SK-N-MC	brain:	n/a
36	chr8:8412440-8412490	MCF10A-Er-Src	breast:	n/a
37	chr8:8402366-8402416	ProgFib	skin:	n/a
38	chr8:8412440-8412490	AoSMC	blood vessel:	n/a
39	chr8:8402366-8402416	HCPEpiC	choroid plexus:	n/a
40	chr8:8402366-8402416	AG09309	skin:	n/a
41	chr8:8412440-8412490	HMEC	breast:	n/a
42	chr8:8388047-8388097	A549	lung:	n/a
43	chr8:8341955-8342005	HMEC	breast:	n/a
44	chr8:8388047-8388097	RPTEC	kidney:	n/a
45	chr8:8402366-8402416	HL-60	blood:	n/a
46	chr8:8341955-8342005	AG09309	skin:	n/a
47	chr8:8341955-8342005	H1-hESC	embryonic stem cell:	embryo
48	chr8:8388047-8388097	Hela-S3	cervix:	n/a
49	chr8:8412440-8412490	SK-N-SH_RA	brain:	n/a
50	chr8:8388047-8388097	BJ	skin:	n/a

(count:51 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:118505556..118506083-chr8:8380254..8381027,2	HCT-116	colon:
2	chr8:8411406..8413359-chr8:8458313..8460568,2	MCF-7	breast:
3	chr8:8395182..8397914-chr8:8412349..8414858,2	MCF-7	breast:
4	chr8:8398950..8401316-chr8:8404016..8406720,2	MCF-7	breast:
5	chr8:8384527..8386241-chr8:8388279..8389863,2	MCF-7	breast:
6	chr8:8369177..8371886-chr8:8372466..8374646,2	K562	blood:
7	chr8:8398950..8401316-chr8:8404016..8406720,2	MCF-7	breast:
8	chr8:8130411..8130935-chr8:8374466..8375028,2	K562	blood:
9	chr8:8172038..8172585-chr8:8365267..8365778,2	MCF-7	breast:
10	chr8:8317400..8319199-chr8:8344944..8347907,2	MCF-7	breast:
11	chr8:8403320..8405523-chr8:8412097..8413733,2	K562	blood:
12	chr8:8373770..8375997-chr8:8384938..8387829,2	MCF-7	breast:
13	chr8:8411664..8414236-chr8:8423427..8425709,2	MCF-7	breast:
14	chr8:8241232..8244051-chr8:8373031..8376010,3	MCF-7	breast:
15	chr8:8174141..8174643-chr8:8351385..8352080,2	K562	blood:
16	chr8:8369177..8371886-chr8:8372466..8374646,2	K562	blood:
17	chr8:8146386..8147240-chr8:8365579..8366086,2	MCF-7	breast:
18	chr8:8405670..8408413-chr8:8410858..8412473,2	K562	blood:
19	chr8:8234038..8235691-chr8:8350629..8352175,2	MCF-7	breast:
20	chr8:8395034..8396944-chr8:8396976..8398934,2	MCF-7	breast:
21	chr8:8412630..8415274-chr8:8423101..8424700,2	K562	blood:
22	chr8:8411777..8414467-chr8:8512420..8515459,3	MCF-7	breast:
23	chr8:8403320..8405523-chr8:8412097..8413733,2	K562	blood:
24	chr8:8373770..8375997-chr8:8384938..8387829,2	MCF-7	breast:
25	chr8:8146302..8147264-chr8:8365295..8366108,2	MCF-7	breast:
26	chr8:8237437..8239484-chr8:8365822..8367585,2	MCF-7	breast:
27	chr8:8346656..8348719-chr8:8355280..8357515,2	K562	blood:
28	chr8:8411447..8415576-chr8:8419918..8422813,4	MCF-7	breast:
29	chr8:8405670..8408413-chr8:8410858..8412473,2	K562	blood:
30	chr19:2475818..2476408-chr8:8412492..8413168,2	HCT-116	colon:
31	chr8:8361888..8365563-chr8:8365721..8369530,3	MCF-7	breast:
32	chr8:8384527..8386241-chr8:8388279..8389863,2	MCF-7	breast:
33	chr8:8402871..8405951-chr8:8409300..8411687,3	MCF-7	breast:
34	chr8:8242353..8245621-chr8:8412264..8415410,4	MCF-7	breast:
35	chr8:8405511..8408091-chr8:8411497..8414103,2	MCF-7	breast:
36	chr8:8147508..8148471-chr8:8365206..8366162,5	MCF-7	breast:
37	chr8:8346656..8348719-chr8:8355280..8357515,2	K562	blood:
38	chr8:8353865..8355858-chr8:8364054..8366551,2	MCF-7	breast:
39	chr8:8395182..8397914-chr8:8412349..8414858,2	MCF-7	breast:
40	chr8:8402871..8405951-chr8:8409300..8411687,3	MCF-7	breast:
41	chr8:8146274..8147281-chr8:8365228..8366135,6	MCF-7	breast:
42	chr8:8336166..8336977-chr8:8365242..8366154,6	MCF-7	breast:
43	chr8:8361888..8365563-chr8:8365721..8369530,3	MCF-7	breast:
44	chr8:8242030..8244345-chr8:8365871..8368384,3	MCF-7	breast:
45	chr8:8360593..8362443-chr8:8363816..8365760,2	K562	blood:
46	chr8:8405511..8408091-chr8:8411497..8414103,2	MCF-7	breast:
47	chr8:8353865..8355858-chr8:8364054..8366551,2	MCF-7	breast:
48	chr8:8336166..8336956-chr8:8365242..8366153,3	MCF-7	breast:
49	chr8:8317642..8319537-chr8:8411427..8414292,2	MCF-7	breast:
50	chr8:8395034..8396944-chr8:8396976..8398934,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLDN23-1	chr8:8412783-8413276	NONHSAT124878
2	lnc-PRAGMIN.1-4	chr8:8413248-8413598	ENSG00000253343
3	lnc-PRAGMIN.1-8	chr8:8344925-8345359	NONHSAT124876

No data

Variant related genes	Relation type
ENSG00000253774	TF binding region
ENSG00000253130	TF binding region
ENSG00000253774	CpG island
ENSG00000253130	CpG island
ENSG00000182319	chromatin interactions
ENSG00000099860	chromatin interactions
ENSG00000254153	chromatin interactions
ENSG00000019144	chromatin interactions

Extended variants
information (count: 4183 )
Associated
traits (count: 139 )

Variant overlapped rSNPs/rCNVs (count:4183 , 50 per page) page: 1 2 3 4 5 6 7 ... 84

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2976902	chr8:8341105-8341106	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs56321080	chr8:8341113-8341114	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs539247487	chr8:8341124-8341125	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs373157656	chr8:8341149-8341150	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs2980739	chr8:8341154-8341155	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs555868774	chr8:8341172-8341173	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs185057398	chr8:8341179-8341180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs143204025	chr8:8341188-8341189	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs2976903	chr8:8341254-8341255	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs572655485	chr8:8341256-8341257	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs2976904	chr8:8341265-8341266	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs555408154	chr8:8341266-8341267	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs35180799	chr8:8341271-8341272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs10088369	chr8:8341284-8341285	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs2976905	chr8:8341295-8341296	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs2980740	chr8:8341323-8341324	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs55737826	chr8:8341339-8341340	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs3116002	chr8:8341354-8341355	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs74958441	chr8:8341359-8341360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs74623821	chr8:8341365-8341366	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs2980741	chr8:8341370-8341371	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs533662245	chr8:8341439-8341440	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs116249492	chr8:8341479-8341480	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs559736564	chr8:8341484-8341485	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs2979199	chr8:8341508-8341509	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs146241083	chr8:8341539-8341540	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs189572330	chr8:8341545-8341546	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113258426	chr8:8341583-8341584	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181874458	chr8:8341591-8341592	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549530255	chr8:8341594-8341595	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183934449	chr8:8341602-8341603	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs137942614	chr8:8341604-8341605	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548663222	chr8:8341606-8341607	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs560502403	chr8:8341612-8341613	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370473749	chr8:8341656-8341657	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs2980742	chr8:8341678-8341679	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs549231027	chr8:8341699-8341700	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs36086961	chr8:8341704-8341705	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534305008	chr8:8341742-8341743	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558460628	chr8:8341756-8341757	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188266890	chr8:8341771-8341772	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537659770	chr8:8341775-8341776	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs142405960	chr8:8341850-8341851	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569286192	chr8:8341859-8341860	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs180674536	chr8:8341886-8341887	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs543191865	chr8:8341938-8341939	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376525652	chr8:8341944-8341945	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73664668	chr8:8341945-8341946	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs531605883	chr8:8341959-8341960	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs186580752	chr8:8341988-8341989	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:139)

Disease	PMID	Source
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16774939	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Bladder cancer	21909424	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1124 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8336800-8341200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:8336800-8345000	Weak transcription	Right Atrium	heart
3	chr8:8339600-8343000	Enhancers	Dnd41	blood
4	chr8:8339800-8341800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:8340000-8342800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:8340200-8342000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:8340200-8342000	Enhancers	Fetal Thymus	thymus
8	chr8:8340200-8342000	Enhancers	HepG2	liver
9	chr8:8340400-8341200	Enhancers	NHDF-Ad	bronchial
10	chr8:8340400-8341400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:8340400-8341400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:8340400-8341600	Enhancers	Osteobl	bone
13	chr8:8340400-8341800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:8340400-8341800	Enhancers	GM12878-XiMat	blood
15	chr8:8340400-8342000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:8340400-8342000	Enhancers	HMEC	breast
17	chr8:8340400-8342000	Enhancers	NHLF	lung
18	chr8:8340600-8341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:8340600-8341400	Enhancers	HSMMtube	muscle
20	chr8:8340600-8341600	Enhancers	Hela-S3	cervix
21	chr8:8340600-8341600	Enhancers	HSMM	muscle
22	chr8:8340800-8341200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr8:8340800-8341200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr8:8340800-8341400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:8340800-8341400	Enhancers	Primary T cells from cord blood	blood
26	chr8:8340800-8341400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:8340800-8341400	Flanking Active TSS	A549	lung
28	chr8:8340800-8341800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:8340800-8342800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:8341000-8341200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:8341000-8341200	Flanking Active TSS	NHEK	skin
32	chr8:8341000-8341400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:8341000-8341400	Enhancers	Ovary	ovary
34	chr8:8341000-8341400	Enhancers	Pancreas	Pancrea
35	chr8:8341000-8341600	Enhancers	Placenta	Placenta
36	chr8:8341000-8342000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:8341000-8342600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:8341200-8341400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:8341200-8341400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:8341200-8342000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:8341200-8342800	Enhancers	NHEK	skin
42	chr8:8341400-8341800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:8341400-8342200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:8341400-8342400	Enhancers	A549	lung
45	chr8:8341400-8342800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:8341600-8342600	Weak transcription	Placenta	Placenta
47	chr8:8341600-8342800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr8:8341800-8342000	Enhancers	Fetal Lung	lung
49	chr8:8341800-8342200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr8:8341800-8342400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links