Variant report

Variant	nsv610222
Chromosome Location	chr8:9060044-9061631
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9061535..9063157-chr8:9069276..9071088,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-10A14.4.1-2	chr8:9060009-9060357	NONHSAT124930
2	lnc-RP11-10A14.4.1-2	chr8:9060009-9060363	XLOC_006705
3	lnc-RP11-10A14.4.1-2	chr8:9060009-9060366	XLOC_006705
4	lnc-RP11-10A14.4.1-2	chr8:9059902-9060357	NONHSAT124931
5	lnc-RP11-10A14.4.1-2	chr8:9060009-9060347	ENSG00000248538
6	lnc-RP11-10A14.4.1-2	chr8:9060009-9060364	ENSG00000248538
7	lnc-RP11-10A14.4.1-2	chr8:9060009-9060368	NONHSAT124925

No data

Extended variants
information (count: 76 )
Associated
traits (count: 135 )

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs959932	chr8:9060044-9060045	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs368272119	chr8:9060049-9060050	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs547062811	chr8:9060076-9060077	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs1053036	chr8:9060077-9060078	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs539207978	chr8:9060151-9060152	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs556231466	chr8:9060160-9060161	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs576265184	chr8:9060169-9060170	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs371177168	chr8:9060259-9060260	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs555560783	chr8:9060264-9060265	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs537885738	chr8:9060273-9060274	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs554964136	chr8:9060287-9060288	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs574855085	chr8:9060320-9060321	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs201476245	chr8:9060360-9060361	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs575538968	chr8:9060374-9060375	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs192938901	chr8:9060402-9060403	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs7012430	chr8:9060410-9060411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558125379	chr8:9060435-9060436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189471387	chr8:9060437-9060438	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs181588417	chr8:9060501-9060502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs77886475	chr8:9060503-9060504	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs74743611	chr8:9060529-9060530	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537051854	chr8:9060537-9060538	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs561369640	chr8:9060559-9060560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs527248573	chr8:9060574-9060575	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs577263213	chr8:9060596-9060597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs547099970	chr8:9060602-9060603	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570204247	chr8:9060603-9060604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs377453507	chr8:9060671-9060672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs140395782	chr8:9060696-9060697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs549932458	chr8:9060760-9060761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs17155382	chr8:9060774-9060775	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs535762872	chr8:9060775-9060776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs374988042	chr8:9060815-9060816	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs367983401	chr8:9060816-9060817	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs367916661	chr8:9060843-9060844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs79302086	chr8:9060844-9060845	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs546188026	chr8:9060876-9060877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570541793	chr8:9060897-9060898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs183740129	chr8:9060957-9060958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs374175725	chr8:9060970-9060971	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs539577461	chr8:9060971-9060972	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs79431934	chr8:9060983-9060984	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577392804	chr8:9061002-9061003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs546117671	chr8:9061064-9061065	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs2409122	chr8:9061067-9061068	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs377619434	chr8:9061069-9061070	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs576533144	chr8:9061219-9061220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs78979510	chr8:9061222-9061223	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs566325741	chr8:9061235-9061236	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs562004375	chr8:9061246-9061247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:135)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Bladder cancer	21909424	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9056600-9064000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:9058400-9063000	Weak transcription	Placenta	Placenta
3	chr8:9059800-9061400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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