Variant report

Variant	nsv613300
Chromosome Location	chr9:8939940-8993618
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-9	chr9:8962800-8963077	ENSG00000234021
2	lnc-KDM4C-9	chr9:8962124-8962189	ENSG00000234021
3	lnc-KDM4C-9	chr9:8958722-8958848	ENSG00000234021

Extended variants
information (count: 1322 )
Associated
traits (count: 113 )

Variant overlapped rSNPs/rCNVs (count:1322 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528726582	chr9:8946273-8946274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs551691447	chr9:8946278-8946279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs386732399	chr9:8946300-8946301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547201822	chr9:8946303-8946304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs186068857	chr9:8946306-8946307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs191908480	chr9:8946330-8946331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs72706302	chr9:8946333-8946334	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs575704544	chr9:8946336-8946337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs10759024	chr9:8946346-8946347	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs536243166	chr9:8946347-8946348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs140306057	chr9:8946353-8946354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566610090	chr9:8946359-8946360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs533753035	chr9:8946363-8946364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs143976370	chr9:8946364-8946365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577064046	chr9:8946376-8946377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10977393	chr9:8946379-8946380	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs556172390	chr9:8946407-8946408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs574423839	chr9:8946412-8946413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs146428920	chr9:8946421-8946422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs141075101	chr9:8946492-8946493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs370059973	chr9:8946495-8946496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs540852958	chr9:8946496-8946497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs374389536	chr9:8946498-8946499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs79194369	chr9:8946517-8946518	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs551298713	chr9:8946552-8946553	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs150168443	chr9:8946557-8946558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs181524585	chr9:8946569-8946570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs138675091	chr9:8946584-8946585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs530069108	chr9:8946595-8946596	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs186655910	chr9:8946599-8946600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs371255389	chr9:8946613-8946614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs544744796	chr9:8946746-8946747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533982519	chr9:8946764-8946765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs35445760	chr9:8946808-8946809	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs369025921	chr9:8946819-8946820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs55765429	chr9:8946823-8946824	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs377126650	chr9:8946837-8946838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs537644488	chr9:8946850-8946851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs556451926	chr9:8946859-8946860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs574770423	chr9:8946877-8946878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535460450	chr9:8946903-8946904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs553776625	chr9:8946910-8946911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs55669316	chr9:8946932-8946933	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs368206370	chr9:8946940-8946941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs545874638	chr9:8946970-8946971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs373386245	chr9:8947003-8947004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs71497120	chr9:8947005-8947006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs71497121	chr9:8947013-8947014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs143478859	chr9:8947014-8947015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs398113213	chr9:8947023-8947024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:113)

Disease	PMID	Source
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8946200-8946800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:8946200-8947000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:8946400-8947000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:8946400-8947000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:8947000-8950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:8947000-8955000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:8949400-8949800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:8949400-8950000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:8949400-8950400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr9:8949400-8950400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:8950000-8961200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:8950400-8954800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:8950400-8955200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:8954200-8954400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:8954400-8955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:8954800-8956000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:8955000-8955600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:8955000-8956600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:8955000-8957200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:8955200-8957000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:8955200-8957000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:8955400-8956800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:8956000-8956200	Enhancers	Brain Substantia Nigra	brain
24	chr9:8956000-8956800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:8956200-8957200	Weak transcription	Brain Substantia Nigra	brain
26	chr9:8956600-8957200	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:8956800-8957000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:8957000-8957800	Enhancers	Brain Angular Gyrus	brain
29	chr9:8957000-8961400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:8957200-8957600	Enhancers	Brain Substantia Nigra	brain
31	chr9:8957200-8961200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:8957600-8961400	Weak transcription	Brain Substantia Nigra	brain
33	chr9:8957600-8962200	Enhancers	Liver	Liver
34	chr9:8957800-8961200	Weak transcription	Brain Angular Gyrus	brain
35	chr9:8958000-8962600	Enhancers	HepG2	liver
36	chr9:8959000-8959400	Enhancers	Adipose Nuclei	Adipose
37	chr9:8959400-8959800	Weak transcription	Adipose Nuclei	Adipose
38	chr9:8959800-8962000	Enhancers	Adipose Nuclei	Adipose
39	chr9:8960000-8962000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:8960200-8962600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:8960200-8963200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:8960400-8962600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr9:8960600-8961800	Enhancers	Fetal Heart	heart
44	chr9:8961200-8961600	Enhancers	Brain Hippocampus Middle	brain
45	chr9:8961200-8961800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr9:8961200-8961800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr9:8961200-8961800	Enhancers	Brain Angular Gyrus	brain
48	chr9:8961200-8961800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr9:8961200-8962000	Enhancers	Brain Cingulate Gyrus	brain
50	chr9:8961400-8961600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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