Variant report

Variant	nsv613411
Chromosome Location	chr9:11108586-11133965
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:11115862..11118704-chr9:11119627..11122004,2	MCF-7	breast:
2	chr9:11115862..11118704-chr9:11119627..11122004,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRD-2	chr9:11108072-11109984	XLOC_007644

Variant related genes	Relation type
CSRNP3	miRNA target sites

Extended variants
information (count: 401 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:401 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1577120	chr9:11108586-11108587	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs190486181	chr9:11108587-11108588	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs549197607	chr9:11108608-11108609	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs183006777	chr9:11108622-11108623	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs73641389	chr9:11108648-11108649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs1577119	chr9:11108671-11108672	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs186592428	chr9:11108672-11108673	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs537087943	chr9:11108675-11108676	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs543487727	chr9:11108679-11108680	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs557173705	chr9:11108684-11108685	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs574119408	chr9:11108690-11108691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs141804571	chr9:11108699-11108700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs555628676	chr9:11108714-11108715	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs375598000	chr9:11108731-11108732	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs72694232	chr9:11108738-11108739	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs541286393	chr9:11108745-11108746	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs1591245	chr9:11108766-11108767	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs1591244	chr9:11108800-11108801	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs10959532	chr9:11108802-11108803	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs35461987	chr9:11108823-11108824	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs547421108	chr9:11108847-11108848	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs192198186	chr9:11108860-11108861	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs566365653	chr9:11108861-11108862	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs538438875	chr9:11108880-11108881	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs529009706	chr9:11108921-11108922	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs139169727	chr9:11108997-11108998	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs182710815	chr9:11109005-11109006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs563757530	chr9:11109024-11109025	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs551613465	chr9:11109028-11109029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs149509627	chr9:11109072-11109073	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs35144101	chr9:11109080-11109081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs537042246	chr9:11109087-11109088	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs550989125	chr9:11109096-11109097	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs144748467	chr9:11109102-11109103	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs551990959	chr9:11109179-11109180	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs536724013	chr9:11109212-11109213	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs187757232	chr9:11109214-11109215	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs11515052	chr9:11109237-11109238	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs112595248	chr9:11109266-11109267	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs543462106	chr9:11109271-11109272	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs1120832	chr9:11109278-11109279	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs558074081	chr9:11109292-11109293	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs577364755	chr9:11109301-11109302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs114373356	chr9:11109335-11109336	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs192712326	chr9:11109362-11109363	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs139962923	chr9:11109373-11109374	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs182389234	chr9:11109377-11109378	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs542277391	chr9:11109382-11109383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs546125302	chr9:11109407-11109408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs111854299	chr9:11109418-11109419	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11124200-11124600	Enhancers	Fetal Heart	heart
2	chr9:11127600-11127800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:11127800-11128800	Enhancers	NHEK	skin
4	chr9:11128400-11128600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:11130000-11130200	Enhancers	Fetal Lung	lung
6	chr9:11130200-11130800	Weak transcription	Fetal Lung	lung
7	chr9:11130800-11132000	Enhancers	Fetal Lung	lung
8	chr9:11132000-11136000	Weak transcription	Fetal Lung	lung

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