Variant report

Variant	nsv613446
Chromosome Location	chr9:11709025-11820083
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRD-10	chr9:11819221-11819360	l_3733_chr9:11816028-11824988_testes
2	lnc-PTPRD-10	chr9:11816029-11816601	l_3733_chr9:11816028-11824988_testes

Extended variants
information (count: 461 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:461 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371312448	chr9:11728621-11728622	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs576708454	chr9:11728624-11728625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs564305781	chr9:11728628-11728629	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs533192297	chr9:11728636-11728637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs549888118	chr9:11728654-11728655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs372804498	chr9:11728672-11728673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs569731331	chr9:11728677-11728678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs180797137	chr9:11728714-11728715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs566463508	chr9:11728723-11728724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs536146967	chr9:11728750-11728751	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs377250630	chr9:11728754-11728755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs7024387	chr9:11728789-11728790	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs185201675	chr9:11728796-11728797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs572618667	chr9:11728809-11728810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12350169	chr9:11728848-11728849	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs577792744	chr9:11728852-11728853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs3926216	chr9:11728856-11728857	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs190307062	chr9:11728859-11728860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs181108519	chr9:11728911-11728912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs79515654	chr9:11728929-11728930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542723111	chr9:11728930-11728931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs186097548	chr9:11728931-11728932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs573205215	chr9:11728936-11728937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs191819700	chr9:11728942-11728943	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564259525	chr9:11728947-11728948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533283179	chr9:11728949-11728950	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs12350218	chr9:11728990-11728991	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs184045367	chr9:11729004-11729005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs188975976	chr9:11729019-11729020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs73405330	chr9:11729025-11729026	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs115061802	chr9:11729039-11729040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs139050787	chr9:11729048-11729049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs145270258	chr9:11729049-11729050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552034585	chr9:11729083-11729084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs10960131	chr9:11729084-11729085	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs537352294	chr9:11729091-11729092	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs370932061	chr9:11729117-11729118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs535839583	chr9:11729119-11729120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs557093234	chr9:11729122-11729123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs191877092	chr9:11729135-11729136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs114289945	chr9:11729139-11729140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs118079540	chr9:11729146-11729147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs201893070	chr9:11729156-11729157	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs545041434	chr9:11729181-11729182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs1486804	chr9:11729182-11729183	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs182924607	chr9:11729204-11729205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs144990876	chr9:11729231-11729232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs368315134	chr9:11729248-11729249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs73405332	chr9:11729275-11729276	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs186496053	chr9:11729289-11729290	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Schizophrenia	18511947	CNVD
Schizophrenia	23813976	CNVD
Type 2 diabetes	21526130	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11728600-11729400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:11728800-11729200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:11729000-11729400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:11743000-11743800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:11748800-11750000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:11775800-11776400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr9:11779600-11780800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:11788400-11788600	Enhancers	Pancreas	Pancrea
9	chr9:11795000-11795400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:11806000-11806600	Enhancers	Fetal Heart	heart
11	chr9:11812600-11813000	Enhancers	Fetal Brain Male	brain
12	chr9:11819200-11820000	Weak transcription	Fetal Brain Male	brain
13	chr9:11820000-11820200	Enhancers	Fetal Brain Male	brain
14	chr9:11820000-11821400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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