Variant report

Variant	nsv613658
Chromosome Location	chr9:15636260-15727518
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15510294..15512690-chr9:15720146..15721868,2	MCF-7	breast:
2	chr9:15690406..15691946-chr9:15692582..15695063,2	MCF-7	breast:
3	chr9:15690406..15691946-chr9:15692582..15695063,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164985	chromatin interactions

Extended variants
information (count: 4374 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:4374 , 50 per page) page: 1 2 3 4 5 6 7 ... 88

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs451878	chr9:15636260-15636261	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs561386031	chr9:15636263-15636264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs144918911	chr9:15636264-15636265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146749194	chr9:15636269-15636270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140371652	chr9:15636281-15636282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532954722	chr9:15636286-15636287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191245100	chr9:15636319-15636320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117511357	chr9:15636335-15636336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs79915321	chr9:15636356-15636357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs137862346	chr9:15636358-15636359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149484152	chr9:15636386-15636387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538526770	chr9:15636428-15636429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75333185	chr9:15636430-15636431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs578210702	chr9:15636432-15636433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538807584	chr9:15636441-15636442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78024246	chr9:15636445-15636446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572593341	chr9:15636474-15636475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs145865977	chr9:15636483-15636484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138504027	chr9:15636544-15636545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs573335818	chr9:15636552-15636553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs543826308	chr9:15636563-15636564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562595424	chr9:15636575-15636576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569223118	chr9:15636588-15636589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs114114749	chr9:15636603-15636604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs560344441	chr9:15636650-15636651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527766057	chr9:15636702-15636703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs35329453	chr9:15636720-15636721	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs567780082	chr9:15636724-15636725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs35778640	chr9:15636748-15636749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs397726006	chr9:15636769-15636770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143974808	chr9:15636840-15636841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs376557424	chr9:15636850-15636851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550150049	chr9:15636908-15636909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs181160258	chr9:15636956-15636957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs539361471	chr9:15636979-15636980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554071038	chr9:15636980-15636981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs148801933	chr9:15637025-15637026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375468543	chr9:15637029-15637030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561774844	chr9:15637057-15637058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs533627205	chr9:15637082-15637083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527464602	chr9:15637086-15637087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs538342210	chr9:15637118-15637119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555011153	chr9:15637122-15637123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs141555509	chr9:15637132-15637133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs185612771	chr9:15637145-15637146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189978205	chr9:15637150-15637151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556163253	chr9:15637220-15637221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577855942	chr9:15637222-15637223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545312775	chr9:15637243-15637244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560370465	chr9:15637247-15637248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Chordoma	21215367	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:271 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15614400-15645000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15636200-15640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15636200-15640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15639600-15640800	Enhancers	HUVEC	blood vessel
5	chr9:15640000-15640600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:15640000-15640800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:15640600-15641600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:15640800-15643800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:15641200-15641600	Enhancers	Stomach Mucosa	stomach
10	chr9:15641200-15642200	Enhancers	HepG2	liver
11	chr9:15643800-15645600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15644600-15645200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:15645000-15645600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr9:15645000-15645600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:15645600-15689200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:15651400-15660400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:15652200-15666200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:15652400-15652800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:15652800-15654200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:15654200-15655000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:15655000-15658200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:15655200-15691600	Weak transcription	Thymus	Thymus
23	chr9:15657000-15659400	Weak transcription	Adipose Nuclei	Adipose
24	chr9:15658200-15660800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:15659000-15659200	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr9:15659200-15660800	Weak transcription	Brain Anterior Caudate	brain
27	chr9:15660400-15660800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr9:15660800-15666000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:15660800-15666200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:15662000-15662800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr9:15666000-15667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:15666200-15666800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:15666200-15667000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:15666800-15671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:15667000-15670800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:15667200-15670800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:15669000-15720800	Weak transcription	Gastric	stomach
38	chr9:15669200-15676400	Weak transcription	Pancreas	Pancrea
39	chr9:15670000-15671200	Enhancers	GM12878-XiMat	blood
40	chr9:15670800-15671000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
41	chr9:15670800-15671600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:15671600-15672000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:15671600-15673000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:15672000-15688600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:15673000-15674000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:15674000-15675800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:15675000-15699000	Weak transcription	Left Ventricle	heart
48	chr9:15675800-15676200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:15676200-15676800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:15676400-15676600	ZNF genes & repeats	Pancreas	Pancrea

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