Variant report

Variant	nsv613752
Chromosome Location	chr9:21029330-21199680
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1818)
CpG islands
(count:122)
Chromatin interactive
region (count:18)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1818 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr9:21030521-21031319	GM12878	blood:	n/a	n/a
2	ATF2	chr9:21096241-21096694	GM12878	blood:	n/a	n/a
3	ATF2	chr9:21096158-21096906	GM12878	blood:	n/a	n/a
4	ATF3	chr9:21096343-21096742	GM12878	blood:	n/a	n/a
5	BACH1	chr9:21070100-21070522	H1-hESC	embryonic stem cell:	n/a	chr9:21070284-21070298
6	BACH1	chr9:21031617-21031695	H1-hESC	embryonic stem cell:	n/a	n/a
7	BATF	chr9:21160171-21160535	GM12878	blood:	n/a	n/a
8	BATF	chr9:21195481-21195714	GM12878	blood:	n/a	n/a
9	BATF	chr9:21183391-21183669	GM12878	blood:	n/a	n/a
10	BATF	chr9:21160236-21160531	GM12878	blood:	n/a	n/a
11	BATF	chr9:21183393-21183622	GM12878	blood:	n/a	n/a
12	BATF	chr9:21154219-21154564	GM12878	blood:	n/a	n/a
13	BATF	chr9:21154272-21154547	GM12878	blood:	n/a	n/a
14	BATF	chr9:21195452-21195727	GM12878	blood:	n/a	n/a
15	BATF	chr9:21030585-21030869	GM12878	blood:	n/a	n/a
16	BATF	chr9:21030512-21031239	GM12878	blood:	n/a	n/a
17	BCL11A	chr9:21195471-21195683	GM12878	blood:	n/a	chr9:21195583-21195592
18	BCL11A	chr9:21154322-21154533	GM12878	blood:	n/a	chr9:21154420-21154429
19	BCL11A	chr9:21183431-21183637	GM12878	blood:	n/a	chr9:21183522-21183531
20	BCL11A	chr9:21195389-21195749	GM12878	blood:	n/a	chr9:21195583-21195592
21	BCL3	chr9:21031460-21031770	GM12878	blood:	n/a	chr9:21031655-21031668 chr9:21031593-21031602
22	BCLAF1	chr9:21030890-21031425	GM12878	blood:	n/a	n/a
23	BCLAF1	chr9:21110892-21111373	GM12878	blood:	n/a	n/a
24	BCLAF1	chr9:21030537-21031939	GM12878	blood:	n/a	chr9:21031655-21031668 chr9:21031593-21031602
25	BHLHE40	chr9:21121132-21121436	GM12878	blood:	n/a	n/a
26	BHLHE40	chr9:21195256-21195293	GM12878	blood:	n/a	n/a
27	BHLHE40	chr9:21030703-21031440	GM12878	blood:	n/a	n/a
28	BHLHE40	chr9:21118951-21119419	GM12878	blood:	n/a	chr9:21119195-21119204 chr9:21119196-21119205 chr9:21119196-21119205
29	BHLHE40	chr9:21121811-21122218	GM12878	blood:	n/a	n/a
30	BHLHE40	chr9:21061272-21061492	GM12878	blood:	n/a	n/a
31	BRCA1	chr9:21144902-21144907	GM12878	blood:	n/a	n/a
32	BRCA1	chr9:21136902-21136913	GM12878	blood:	n/a	n/a
33	CEBPB	chr9:21176035-21176261	A549	lung:	n/a	chr9:21176156-21176169 chr9:21176156-21176169 chr9:21176158-21176167 chr9:21176233-21176244 chr9:21176231-21176244 chr9:21176156-21176167 chr9:21176157-21176168
34	CEBPB	chr9:21095672-21095870	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr9:21094810-21095111	IMR90	lung:	n/a	n/a
36	CEBPB	chr9:21039006-21039342	IMR90	lung:	n/a	n/a
37	CEBPB	chr9:21096311-21096675	IMR90	lung:	n/a	chr9:21096515-21096526
38	CEBPB	chr9:21039032-21039316	A549	lung:	n/a	n/a
39	CEBPB	chr9:21096270-21096935	Hela-S3	cervix:	n/a	chr9:21096805-21096813 chr9:21096515-21096526
40	CEBPB	chr9:21096160-21097105	GM12878	blood:	n/a	chr9:21096805-21096813 chr9:21096515-21096526
41	CEBPB	chr9:21119156-21119446	IMR90	lung:	n/a	chr9:21119276-21119287 chr9:21119276-21119289
42	CEBPB	chr9:21096328-21096670	A549	lung:	n/a	chr9:21096515-21096526
43	CEBPB	chr9:21152635-21152766	IMR90	lung:	n/a	n/a
44	CEBPB	chr9:21115135-21115583	MCF-7	breast:	n/a	n/a
45	CEBPB	chr9:21176025-21176293	H1-hESC	embryonic stem cell:	n/a	chr9:21176156-21176169 chr9:21176156-21176169 chr9:21176158-21176167 chr9:21176233-21176244 chr9:21176231-21176244 chr9:21176156-21176167 chr9:21176157-21176168
46	CEBPB	chr9:21119183-21119453	A549	lung:	n/a	chr9:21119276-21119287 chr9:21119276-21119289
47	CEBPB	chr9:21094881-21095125	A549	lung:	n/a	n/a
48	CEBPB	chr9:21096333-21096682	HepG2	liver:	n/a	chr9:21096515-21096526
49	CEBPB	chr9:21154160-21154391	A549	lung:	n/a	n/a
50	CEBPB	chr9:21046642-21046856	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:21187344-21187394	Jurkat	blood:	n/a
2	chr9:21031822-21031872	Hepatocyte	liver:	n/a
3	chr9:21187344-21187394	U87	brain:	n/a
4	chr9:21031822-21031872	HCF	heart:	n/a
5	chr9:21031822-21031872	HAEpiC	amniotic membrane:	n/a
6	chr9:21031822-21031872	HCPEpiC	choroid plexus:	n/a
7	chr9:21187344-21187394	HepG2	liver:	n/a
8	chr9:21031822-21031872	K562	blood:	n/a
9	chr9:21031822-21031872	MCF-7	breast:	n/a
10	chr9:21031822-21031872	AG04450	lung:	fetal
11	chr9:21031822-21031872	H1-hESC	embryonic stem cell:	embryo
12	chr9:21187344-21187394	GM12892	blood:	n/a
13	chr9:21187344-21187394	MCF-7	breast:	n/a
14	chr9:21031822-21031872	AG10803	skin:	n/a
15	chr9:21187344-21187394	ProgFib	skin:	n/a
16	chr9:21031822-21031872	PrEC	prostate:	n/a
17	chr9:21031822-21031872	PFSK-1	brain:	n/a
18	chr9:21187344-21187394	HEEpiC	esophagus:	n/a
19	chr9:21031822-21031872	SKMC	muscle:	n/a
20	chr9:21031822-21031872	Jurkat	blood:	n/a
21	chr9:21031822-21031872	AG04449	skin:	fetal
22	chr9:21187344-21187394	HCPEpiC	choroid plexus:	n/a
23	chr9:21031822-21031872	HepG2	liver:	n/a
24	chr9:21187344-21187394	Hela-S3	cervix:	n/a
25	chr9:21187344-21187394	AG04450	lung:	fetal
26	chr9:21187344-21187394	RPTEC	kidney:	n/a
27	chr9:21031822-21031872	SK-N-SH	brain:	n/a
28	chr9:21187344-21187394	AG09309	skin:	n/a
29	chr9:21187344-21187394	HRCEpiC	kidney:	n/a
30	chr9:21031822-21031872	HCT-116	colon:	n/a
31	chr9:21031822-21031872	HRCEpiC	kidney:	n/a
32	chr9:21031822-21031872	HRPEpiC	eye:	n/a
33	chr9:21187344-21187394	PrEC	prostate:	n/a
34	chr9:21031822-21031872	BE2_C	brain:	n/a
35	chr9:21187344-21187394	H1-hESC	embryonic stem cell:	embryo
36	chr9:21031822-21031872	T-47D	breast:	n/a
37	chr9:21031822-21031872	GM19239	blood:	n/a
38	chr9:21187344-21187394	NHDF-neo	bronchial:	n/a
39	chr9:21187344-21187394	HCF	heart:	n/a
40	chr9:21187344-21187394	HPAEpiC	pulmonary alveolar:	n/a
41	chr9:21031822-21031872	ProgFib	skin:	n/a
42	chr9:21031822-21031872	U87	brain:	n/a
43	chr9:21031822-21031872	SK-N-SH_RA	brain:	n/a
44	chr9:21187344-21187394	GM19239	blood:	n/a
45	chr9:21187344-21187394	GM06990	blood:	n/a
46	chr9:21031822-21031872	MCF10A-Er-Src	breast:	n/a
47	chr9:21187344-21187394	SK-N-SH	brain:	n/a
48	chr9:21031822-21031872	HEEpiC	esophagus:	n/a
49	chr9:21187344-21187394	SK-N-SH_RA	brain:	n/a
50	chr9:21187344-21187394	A549	lung:	n/a

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:72800948..72803891-chr9:21084620..21086617,2	MCF-7	breast:
2	chr9:21130782..21132489-chr9:21132879..21134890,3	MCF-7	breast:
3	chr9:21037226..21039674-chr9:21044094..21046692,2	MCF-7	breast:
4	chr9:21044579..21046540-chr9:21053460..21056237,2	MCF-7	breast:
5	chr9:20682614..20684265-chr9:21107460..21109454,2	MCF-7	breast:
6	chr9:21068380..21070778-chr9:21072335..21074314,2	MCF-7	breast:
7	chr9:21078514..21079405-chr9:21110637..21111248,3	MCF-7	breast:
8	chr9:21044579..21046540-chr9:21053460..21056237,2	MCF-7	breast:
9	chr9:21130782..21132489-chr9:21132879..21134890,3	MCF-7	breast:
10	chr9:21078514..21079405-chr9:21110637..21111248,3	MCF-7	breast:
11	chr9:21037226..21039674-chr9:21044094..21046692,2	MCF-7	breast:
12	chr9:21046351..21048535-chr9:21050216..21052104,2	MCF-7	breast:
13	chr9:21150083..21152339-chr9:21152667..21154547,2	MCF-7	breast:
14	chr9:21150083..21152339-chr9:21152667..21154547,2	MCF-7	breast:
15	chr9:21046351..21048535-chr9:21050216..21052104,2	MCF-7	breast:
16	chr9:21076953..21079185-chr9:21106248..21108735,2	MCF-7	breast:
17	chr9:21068380..21070778-chr9:21072335..21074314,2	MCF-7	breast:
18	chr9:21076953..21079185-chr9:21106248..21108735,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1797-1	chr9:21106542-21106835	NONHSAT130370
2	lnc-IFNB1-1	chr9:21058770-21059322	NONHSAT130369
3	lnc-IFNA4-1	chr9:21190653-21191243	NONHSAT130373
4	lnc-IFNA4-2	chr9:21178588-21179187	NONHSAT130372

No data

Variant related genes	Relation type
ENSG00000199635	TF binding region
IFNW1	TF binding region
IFNNP1	TF binding region
IFNA21	TF binding region
IFNWP15	TF binding region
PTPLAD2	TF binding region
IFNB1	TF binding region
IFNWP9	TF binding region
IFNWP4	TF binding region
IFNA4	TF binding region
ENSG00000199635	CpG island
IFNW1	CpG island
IFNNP1	CpG island
IFNA21	CpG island
IFNWP15	CpG island
PTPLAD2	CpG island
IFNB1	CpG island
IFNWP9	CpG island
IFNWP4	CpG island
IFNA4	CpG island
ENSG00000227071	chromatin interactions
ENSG00000225027	chromatin interactions
ENSG00000188352	chromatin interactions
ENSG00000171855	chromatin interactions

Extended variants
information (count: 5519 )
Associated
traits (count: 158 )

Variant overlapped rSNPs/rCNVs (count:5519 , 50 per page) page: 1 2 3 4 5 6 7 ... 111

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2298260	chr9:21029330-21029331	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs376919713	chr9:21029358-21029359	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs79392110	chr9:21029382-21029383	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs182838456	chr9:21029383-21029384	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs528813460	chr9:21029386-21029387	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs201174106	chr9:21029400-21029401	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs368372470	chr9:21029404-21029405	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs370959089	chr9:21029426-21029427	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs139651010	chr9:21029493-21029494	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs561435829	chr9:21029547-21029548	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs533521607	chr9:21029561-21029562	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs142919654	chr9:21029625-21029626	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs372725306	chr9:21029634-21029635	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs568915911	chr9:21029637-21029638	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs151093016	chr9:21029687-21029688	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs7037601	chr9:21029706-21029707	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs77734407	chr9:21029718-21029719	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs12378299	chr9:21029802-21029803	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs117999932	chr9:21029811-21029812	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs547636188	chr9:21029833-21029834	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs139940663	chr9:21029840-21029841	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs570069863	chr9:21029861-21029862	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs6475499	chr9:21029863-21029864	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs556119453	chr9:21029866-21029867	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs12378278	chr9:21029876-21029877	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs112086078	chr9:21029902-21029903	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs546648557	chr9:21029942-21029943	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs372204383	chr9:21029955-21029956	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs191644655	chr9:21029962-21029963	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs541085266	chr9:21029973-21029974	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs77331745	chr9:21030092-21030093	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs74958760	chr9:21030093-21030094	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs543988253	chr9:21030156-21030157	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs563778108	chr9:21030164-21030165	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs7875765	chr9:21030165-21030166	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs183738793	chr9:21030181-21030182	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs564654173	chr9:21030184-21030185	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs527265300	chr9:21030204-21030205	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs535402187	chr9:21030210-21030211	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs547106809	chr9:21030219-21030220	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs368743266	chr9:21030268-21030269	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs535809011	chr9:21030269-21030270	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs76591760	chr9:21030283-21030284	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs397800832	chr9:21030286-21030287	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs557194959	chr9:21030290-21030291	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs567536720	chr9:21030301-21030302	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs568962459	chr9:21030302-21030303	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs188269673	chr9:21030339-21030340	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs147553499	chr9:21030368-21030369	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs141946566	chr9:21030386-21030387	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:158)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Glioblastoma multiforme	21525872	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
early-passage human iPS cells	21368824	CNVD
XY gonadal dysgenesis	20685758	CNVD
Non-small cell lung cancer	16651412	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Renal cell carcinoma	21215367	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	21811587	CNVD
Pancreatic cancer	17952125	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Oral cancer	22144094	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD

Chromatin state (count:1320 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:20946000-21030600	Weak transcription	Brain Angular Gyrus	brain
2	chr9:20990800-21030800	Weak transcription	Placenta	Placenta
3	chr9:20991000-21030800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:20991000-21030800	Weak transcription	Esophagus	oesophagus
5	chr9:20993000-21031200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:20996600-21031400	Weak transcription	Spleen	Spleen
7	chr9:21006400-21030600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:21006400-21030800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:21006400-21030800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:21006400-21031000	Weak transcription	Aorta	Aorta
11	chr9:21006400-21031000	Weak transcription	Left Ventricle	heart
12	chr9:21006400-21031200	Weak transcription	Lung	lung
13	chr9:21006600-21030600	Weak transcription	Brain Anterior Caudate	brain
14	chr9:21006600-21030600	Weak transcription	Thymus	Thymus
15	chr9:21007200-21030400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:21007200-21030800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:21015600-21030600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:21016400-21030800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:21016600-21030200	Weak transcription	Fetal Stomach	stomach
20	chr9:21016600-21030400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:21016800-21030400	Weak transcription	GM12878-XiMat	blood
22	chr9:21018400-21030400	Weak transcription	NHEK	skin
23	chr9:21018800-21031000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:21022400-21030600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:21024800-21031000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:21025200-21031200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:21025400-21029600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:21026400-21030200	Weak transcription	Primary B cells from cord blood	blood
29	chr9:21026600-21029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:21026600-21029800	Weak transcription	Fetal Thymus	thymus
31	chr9:21026600-21030800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:21026800-21030400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:21026800-21031000	Weak transcription	Ovary	ovary
34	chr9:21027000-21030000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:21027200-21030400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:21027400-21029400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:21027600-21030400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:21027800-21029800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:21027800-21030400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:21027800-21030400	Enhancers	NHDF-Ad	bronchial
41	chr9:21027800-21030600	Weak transcription	NH-A	brain
42	chr9:21027800-21031000	Weak transcription	A549	lung
43	chr9:21027800-21031200	Weak transcription	HSMM	muscle
44	chr9:21028000-21029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:21028000-21030800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:21028400-21029800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr9:21028400-21030400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr9:21028400-21030800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:21028400-21030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:21028400-21031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links