Variant report

Variant	nsv613831
Chromosome Location	chr9:24125018-24154728
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-6	chr9:24146433-24146893	NONHSAT130486
2	lnc-DMRTA1-6	chr9:24146434-24146893	XLOC_007303

Extended variants
information (count: 127 )
Associated
traits (count: 143 )

Variant overlapped rSNPs/rCNVs (count:127 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2210562	chr9:24138906-24138907	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs577146029	chr9:24138919-24138920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs140718554	chr9:24138937-24138938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs553467062	chr9:24138944-24138945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs573393201	chr9:24139008-24139009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs541997222	chr9:24139010-24139011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs555608107	chr9:24139085-24139086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs369151738	chr9:24139101-24139102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs542515058	chr9:24139125-24139126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs185022930	chr9:24139165-24139166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs57325955	chr9:24139182-24139183	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs530975699	chr9:24139192-24139193	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs552275236	chr9:24139219-24139220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs564442410	chr9:24139267-24139268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188644439	chr9:24139282-24139283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs377008413	chr9:24139338-24139339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs73484676	chr9:24139339-24139340	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs559770256	chr9:24139386-24139387	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs111925596	chr9:24139396-24139397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs534660645	chr9:24143929-24143930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554657340	chr9:24143941-24143942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs574823759	chr9:24143950-24143951	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs544656600	chr9:24143962-24143963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs187631502	chr9:24144036-24144037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs113385027	chr9:24144061-24144062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs577079639	chr9:24144074-24144075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs73484686	chr9:24144081-24144082	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs570656389	chr9:24144113-24144114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs559638015	chr9:24144119-24144120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs528403396	chr9:24144134-24144135	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs548503036	chr9:24144148-24144149	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs143935249	chr9:24144159-24144160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs538075836	chr9:24144237-24144238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs572692197	chr9:24144243-24144244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs550387894	chr9:24144266-24144267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs552554934	chr9:24144275-24144276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs570753078	chr9:24144314-24144315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528129618	chr9:24144325-24144326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs10966244	chr9:24144326-24144327	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs190363639	chr9:24144400-24144401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs552363848	chr9:24144410-24144411	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs7854397	chr9:24144419-24144420	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs534982461	chr9:24144437-24144438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs555274920	chr9:24144439-24144440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs568350490	chr9:24144449-24144450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs537471642	chr9:24144462-24144463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs557149268	chr9:24144473-24144474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs181927472	chr9:24144508-24144509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs545978682	chr9:24144518-24144519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs13290114	chr9:24144567-24144568	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:143)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24138800-24139400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:24143800-24145200	Enhancers	Adipose Nuclei	Adipose
3	chr9:24146000-24147200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:24146200-24146800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:24146400-24146800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:24146400-24146800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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