Variant report

Variant	nsv613947
Chromosome Location	chr9:27196119-27292703
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:27276433-27276779	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:27261532-27261892	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:27276480-27276766	K562	blood:	n/a	n/a
4	BHLHE40	chr9:27281155-27281334	K562	blood:	n/a	n/a
5	BHLHE40	chr9:27261364-27261936	HepG2	liver:	n/a	n/a
6	BRCA1	chr9:27261881-27262104	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr9:27227147-27227727	IMR90	lung:	n/a	chr9:27227337-27227348
8	CEBPB	chr9:27258771-27259071	K562	blood:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
9	CEBPB	chr9:27258775-27259094	HepG2	liver:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
10	CEBPB	chr9:27261315-27261855	HepG2	liver:	n/a	n/a
11	CEBPB	chr9:27205299-27205573	HepG2	liver:	n/a	n/a
12	CEBPB	chr9:27203351-27203698	K562	blood:	n/a	chr9:27203510-27203519 chr9:27203510-27203519 chr9:27203510-27203519 chr9:27203508-27203519 chr9:27203510-27203519
13	CEBPB	chr9:27205273-27205571	IMR90	lung:	n/a	n/a
14	CEBPB	chr9:27227195-27227527	HepG2	liver:	n/a	chr9:27227337-27227348
15	CEBPB	chr9:27261286-27261670	MCF-7	breast:	n/a	n/a
16	CEBPB	chr9:27227150-27227597	Hela-S3	cervix:	n/a	chr9:27227337-27227348
17	CEBPB	chr9:27261315-27262115	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr9:27213771-27214035	IMR90	lung:	n/a	chr9:27213910-27213921 chr9:27213908-27213921 chr9:27213908-27213921
19	CEBPB	chr9:27206129-27206382	HepG2	liver:	n/a	chr9:27206247-27206258 chr9:27206247-27206260
20	CEBPB	chr9:27272984-27273198	A549	lung:	n/a	chr9:27273158-27273171
21	CEBPB	chr9:27227230-27227494	K562	blood:	n/a	chr9:27227337-27227348
22	CEBPB	chr9:27258776-27259077	A549	lung:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
23	CEBPB	chr9:27205280-27205603	A549	lung:	n/a	n/a
24	CEBPB	chr9:27248839-27249287	IMR90	lung:	n/a	chr9:27249140-27249151 chr9:27248881-27248898
25	CEBPB	chr9:27248999-27249274	HepG2	liver:	n/a	chr9:27249140-27249151
26	CEBPB	chr9:27198271-27198664	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr9:27248970-27249261	A549	lung:	n/a	chr9:27249140-27249151
28	CEBPB	chr9:27238842-27239132	HepG2	liver:	n/a	chr9:27238966-27238975
29	CEBPB	chr9:27227180-27227530	K562	blood:	n/a	chr9:27227337-27227348
30	CEBPB	chr9:27227200-27227514	A549	lung:	n/a	chr9:27227337-27227348
31	CHD2	chr9:27232395-27232413	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chr9:27247780-27247930	GM12873	blood:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
33	CTCF	chr9:27247840-27247990	GM12865	blood:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
34	CTCF	chr9:27247745-27248001	Medullo	brain:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
35	CTCF	chr9:27276160-27276310	HVMF	connective:	n/a	n/a
36	CTCF	chr9:27247780-27247930	HA-sp	spinal cord:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
37	CTCF	chr9:27198332-27198457	Fibrobl	skin:	n/a	n/a
38	CTCF	chr9:27247760-27247910	HVMF	connective:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
39	CTCF	chr9:27198300-27198450	AG09309	skin:	n/a	n/a
40	CTCF	chr9:27276280-27276430	GM12873	blood:	n/a	n/a
41	CTCF	chr9:27198329-27198464	H1-hESC	embryonic stem cell:	n/a	n/a
42	CTCF	chr9:27198360-27198430	GM12878	blood:	n/a	n/a
43	CTCF	chr9:27247807-27248003	H1-hESC	embryonic stem cell:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
44	CTCF	chr9:27276540-27276690	HFF-Myc	foreskin:	n/a	chr9:27276618-27276636 chr9:27276620-27276633 chr9:27276619-27276635 chr9:27276624-27276633 chr9:27276613-27276634
45	CTCF	chr9:27276409-27276802	A549	lung:	n/a	chr9:27276618-27276636 chr9:27276620-27276633 chr9:27276619-27276635 chr9:27276624-27276633 chr9:27276613-27276634
46	CTCF	chr9:27276560-27276710	HRE	kidney:	n/a	chr9:27276618-27276636 chr9:27276620-27276633 chr9:27276619-27276635 chr9:27276624-27276633 chr9:27276613-27276634
47	CTCF	chr9:27198344-27198401	MCF-7	breast:	n/a	n/a
48	CTCF	chr9:27276520-27276670	HAc	cerebellar:	n/a	chr9:27276618-27276636 chr9:27276620-27276633 chr9:27276619-27276635 chr9:27276624-27276633 chr9:27276613-27276634
49	CTCF	chr9:27247770-27248004	MCF-7	breast:	n/a	chr9:27247863-27247873 chr9:27247860-27247881 chr9:27247858-27247876 chr9:27247861-27247870 chr9:27247859-27247875
50	CTCF	chr9:27247240-27247390	BE2_C	brain:	n/a	chr9:27247243-27247252

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:27248473-27248523	BE2_C	brain:	n/a
2	chr9:27292606-27292656	MCF-7	breast:	n/a
3	chr9:27282776-27282826	K562	blood:	n/a
4	chr9:27292606-27292656	AG09319	gingival:	n/a
5	chr9:27248473-27248523	ECC-1	luminal epithelium:	n/a
6	chr9:27248473-27248523	CMK	blood:	n/a
7	chr9:27292606-27292656	HPAEpiC	pulmonary alveolar:	n/a
8	chr9:27292606-27292656	HAEpiC	amniotic membrane:	n/a
9	chr9:27248473-27248523	Caco-2	colon:	n/a
10	chr9:27282580-27282630	HepG2	liver:	n/a
11	chr9:27282776-27282826	GM19239	blood:	n/a
12	chr9:27248473-27248523	NHDF-neo	bronchial:	n/a
13	chr9:27282580-27282630	U87	brain:	n/a
14	chr9:27282580-27282630	HCF	heart:	n/a
15	chr9:27282580-27282630	HMEC	breast:	n/a
16	chr9:27248473-27248523	AG09309	skin:	n/a
17	chr9:27282580-27282630	GM19239	blood:	n/a
18	chr9:27292606-27292656	HRE	kidney:	n/a
19	chr9:27282580-27282630	HPAEpiC	pulmonary alveolar:	n/a
20	chr9:27282580-27282630	HEK293	kidney:	embryo
21	chr9:27282776-27282826	HRCEpiC	kidney:	n/a
22	chr9:27282580-27282630	A549	lung:	n/a
23	chr9:27292606-27292656	BJ	skin:	n/a
24	chr9:27248473-27248523	U87	brain:	n/a
25	chr9:27282776-27282826	NHDF-neo	bronchial:	n/a
26	chr9:27282580-27282630	AoSMC	blood vessel:	n/a
27	chr9:27292606-27292656	H1-hESC	embryonic stem cell:	embryo
28	chr9:27292606-27292656	ovcar-3	ovarian:	n/a
29	chr9:27292606-27292656	GM12878	blood:	n/a
30	chr9:27282580-27282630	HRPEpiC	eye:	n/a
31	chr9:27282776-27282826	SK-N-SH_RA	brain:	n/a
32	chr9:27248473-27248523	SKMC	muscle:	n/a
33	chr9:27248473-27248523	RPTEC	kidney:	n/a
34	chr9:27248473-27248523	HNPCEpiC	eye:	n/a
35	chr9:27282580-27282630	BJ	skin:	n/a
36	chr9:27292606-27292656	Hepatocyte	liver:	n/a
37	chr9:27248473-27248523	ovcar-3	ovarian:	n/a
38	chr9:27292606-27292656	HCF	heart:	n/a
39	chr9:27282776-27282826	GM12878	blood:	n/a
40	chr9:27282580-27282630	NB4	blood:	n/a
41	chr9:27282776-27282826	GM06990	blood:	n/a
42	chr9:27282580-27282630	AG04449	skin:	fetal
43	chr9:27292606-27292656	HEEpiC	esophagus:	n/a
44	chr9:27292606-27292656	PrEC	prostate:	n/a
45	chr9:27282580-27282630	HEEpiC	esophagus:	n/a
46	chr9:27292606-27292656	SK-N-SH_RA	brain:	n/a
47	chr9:27282776-27282826	HIPEpiC	eye:	n/a
48	chr9:27282580-27282630	AG04450	lung:	fetal
49	chr9:27282580-27282630	HCM	heart:	n/a
50	chr9:27282776-27282826	AG09309	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:27247423..27248703-chr9:27275999..27276820,3	MCF-7	breast:
2	chr9:27033902..27034442-chr9:27247489..27248319,2	MCF-7	breast:
3	chr9:27275368..27278167-chr9:27278207..27280246,2	MCF-7	breast:
4	chr9:27275368..27278167-chr9:27278207..27280246,2	MCF-7	breast:
5	chr9:27033540..27034483-chr9:27275947..27276717,3	MCF-7	breast:
6	chr9:27033503..27034503-chr9:27276144..27277065,4	K562	blood:
7	chr9:27247423..27248703-chr9:27275999..27276820,3	MCF-7	breast:
8	chr9:27247560..27248337-chr9:27547652..27548456,2	MCF-7	breast:
9	chr9:27280860..27282970-chr9:27289180..27290823,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TEK-2	chr9:27245472-27245673	XLOC_007307
2	lnc-C9orf11-1	chr9:27264088-27264284	l_3745_NR_026687
3	lnc-TEK-2	chr9:27245986-27246282	XLOC_007307
4	lnc-C9orf11-1	chr9:27264088-27264284	NONHSAT130610
5	lnc-C9orf11-1	chr9:27258419-27258515	l_3745_NR_026687
6	lnc-C9orf11-1	chr9:27267549-27267774	NONHSAT130610
7	lnc-C9orf11-1	chr9:27266962-27267108	NONHSAT130610
8	lnc-C9orf11-1	chr9:27251828-27252034	NONHSAT130610
9	lnc-C9orf11-1	chr9:27237388-27237508	l_3745_NR_026687
10	lnc-C9orf11-1	chr9:27272328-27272791	l_3745_NR_026687
11	lnc-C9orf11-1	chr9:27270766-27270922	NONHSAT130610
12	lnc-C9orf11-1	chr9:27253207-27253263	l_3745_NR_026687
13	lnc-C9orf11-1	chr9:27272328-27272791	NONHSAT130610
14	lnc-C9orf11-1	chr9:27267549-27267774	l_3745_NR_026687
15	lnc-C9orf11-1	chr9:27266962-27267108	l_3745_NR_026687
16	lnc-C9orf11-1	chr9:27265780-27265948	l_3745_NR_026687
17	lnc-C9orf11-1	chr9:27252710-27252801	NONHSAT130610
18	lnc-C9orf11-1	chr9:27235682-27235760	NONHSAT130610
19	lnc-C9orf11-1	chr9:27270766-27270922	l_3745_NR_026687
20	lnc-C9orf11-1	chr9:27268359-27268726	l_3745_NR_026687
21	lnc-C9orf11-1	chr9:27253207-27253263	NONHSAT130610
22	lnc-C9orf11-1	chr9:27248693-27248766	NONHSAT130610
23	lnc-C9orf11-1	chr9:27248410-27248517	l_3745_NR_026687
24	lnc-C9orf11-1	chr9:27261925-27262086	l_3745_NR_026687
25	lnc-C9orf11-1	chr9:27270426-27270613	l_3745_NR_026687
26	lnc-IFT74-6	chr9:27210325-27210624	NONHSAT130609
27	lnc-C9orf11-1	chr9:27261925-27262086	NONHSAT130610
28	lnc-MOB3B-1	chr9:27292411-27292485	NONHSAT130613
29	lnc-C9orf11-1	chr9:27237388-27237508	NONHSAT130610
30	lnc-C9orf11-1	chr9:27270426-27270613	NONHSAT130610
31	lnc-C9orf11-1	chr9:27248410-27248517	NONHSAT130610
32	lnc-C9orf11-1	chr9:27265780-27265948	NONHSAT130610
33	lnc-C9orf11-1	chr9:27251828-27252034	l_3745_NR_026687
34	lnc-C9orf11-1	chr9:27268359-27268726	NONHSAT130610
35	lnc-C9orf11-1	chr9:27258419-27258515	NONHSAT130610
36	lnc-C9orf11-1	chr9:27252710-27252801	l_3745_NR_026687
37	lnc-C9orf11-1	chr9:27248693-27248766	l_3745_NR_026687
38	lnc-C9orf11-1	chr9:27235684-27235760	l_3745_NR_026687

Variant related genes	Relation type
LINC00032	TF binding region
ENSG00000232867	TF binding region
RNA5SP280	TF binding region
LINC00032	CpG island
ENSG00000232867	CpG island
RNA5SP280	CpG island
ENSG00000231459	chromatin interactions
ATP6V1B2	miRNA target sites

Extended variants
information (count: 3340 )
Associated
traits (count: 132 )

Variant overlapped rSNPs/rCNVs (count:3340 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs633903	chr9:27196119-27196120	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs188769620	chr9:27196124-27196125	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs72713742	chr9:27196142-27196143	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs547955828	chr9:27196147-27196148	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs145922796	chr9:27196163-27196164	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547714015	chr9:27196209-27196210	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs373029578	chr9:27196263-27196264	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs3780315	chr9:27196290-27196291	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs139982130	chr9:27196317-27196318	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs143445611	chr9:27196402-27196403	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs200122865	chr9:27196430-27196431	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs386733896	chr9:27196432-27196433	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs190744641	chr9:27196433-27196434	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs3780313	chr9:27196434-27196435	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs622477	chr9:27196435-27196436	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs180801949	chr9:27196472-27196473	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs553407282	chr9:27196483-27196484	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs511619	chr9:27196494-27196495	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs185478939	chr9:27196574-27196575	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs621629	chr9:27196587-27196588	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs558356427	chr9:27196609-27196610	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs489552	chr9:27196617-27196618	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs538009427	chr9:27196633-27196634	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs73427157	chr9:27196655-27196656	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs549077354	chr9:27196739-27196740	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs116927451	chr9:27196743-27196744	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs368548029	chr9:27196749-27196750	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs367911024	chr9:27196761-27196762	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs368547839	chr9:27196799-27196800	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs370109042	chr9:27196803-27196804	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs374386422	chr9:27196820-27196821	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs367832587	chr9:27196832-27196833	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs574036300	chr9:27196846-27196847	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs59865694	chr9:27196856-27196857	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs200263824	chr9:27196870-27196871	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs541444972	chr9:27196880-27196881	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs559849968	chr9:27196935-27196936	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs145609450	chr9:27196936-27196937	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs545999531	chr9:27196945-27196946	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs530037193	chr9:27196990-27196991	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs564340724	chr9:27197010-27197011	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs115332264	chr9:27197011-27197012	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs550099005	chr9:27197017-27197018	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs190237248	chr9:27197018-27197019	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs374511560	chr9:27197028-27197029	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs145594442	chr9:27197034-27197035	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs10812531	chr9:27197056-27197057	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs181093109	chr9:27197081-27197082	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs75015038	chr9:27197119-27197120	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs112397784	chr9:27197151-27197152	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:132)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Epilepsy	22083797	CNVD
Cancer	22183965	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Lung cancer	20668451	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Cancer	21215367	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:509 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27165400-27198200	Weak transcription	Ovary	ovary
3	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:27180800-27230600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:27184000-27197800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:27184200-27212600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:27192000-27196800	Enhancers	HUVEC	blood vessel
11	chr9:27193000-27203000	Weak transcription	Aorta	Aorta
12	chr9:27193000-27204800	Weak transcription	Lung	lung
13	chr9:27193000-27209000	Weak transcription	Fetal Stomach	stomach
14	chr9:27193000-27212600	Weak transcription	Spleen	Spleen
15	chr9:27193000-27220000	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:27193400-27202600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:27193800-27197200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:27193800-27197200	Enhancers	NHEK	skin
19	chr9:27193800-27197400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:27194800-27198200	Weak transcription	Psoas Muscle	Psoas
21	chr9:27195200-27197000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:27195200-27221800	Weak transcription	Fetal Intestine Large	intestine
23	chr9:27195400-27196600	Weak transcription	Right Atrium	heart
24	chr9:27195400-27197000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:27195400-27198200	Weak transcription	HSMM	muscle
26	chr9:27195400-27202600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:27195400-27203000	Weak transcription	Left Ventricle	heart
28	chr9:27195400-27204800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:27195600-27200600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:27195600-27203600	Weak transcription	Osteobl	bone
31	chr9:27196000-27196200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:27196200-27199000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:27196600-27196800	Enhancers	Right Atrium	heart
34	chr9:27196800-27197200	Weak transcription	HUVEC	blood vessel
35	chr9:27196800-27228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:27197000-27199000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:27197000-27199000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:27197200-27198400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr9:27197200-27199200	Strong transcription	HUVEC	blood vessel
40	chr9:27197200-27203800	Weak transcription	NHEK	skin
41	chr9:27197400-27198200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:27197800-27198600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:27198200-27198400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:27198200-27198400	ZNF genes & repeats	Ovary	ovary
45	chr9:27198200-27198600	Enhancers	Psoas Muscle	Psoas
46	chr9:27198200-27198600	Enhancers	HSMM	muscle
47	chr9:27198400-27204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:27198400-27219800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr9:27198400-27219800	Weak transcription	Ovary	ovary
50	chr9:27198600-27202800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

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