Variant report

Variant	nsv614702
Chromosome Location	chr9:79150903-79159993
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79149027..79151357-chr9:79152128..79154578,2	MCF-7	breast:
2	chr9:79072682..79077481-chr9:79155712..79161702,6	MCF-7	breast:
3	chr9:79149027..79151357-chr9:79152128..79154578,2	MCF-7	breast:
4	chr9:79071953..79074920-chr9:79149530..79152206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187210	chromatin interactions

Extended variants
information (count: 355 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:355 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs653026	chr9:79150903-79150904	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs142295057	chr9:79150939-79150940	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs546877329	chr9:79150971-79150972	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs566316680	chr9:79150979-79150980	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs532352545	chr9:79151036-79151037	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs559300860	chr9:79151038-79151039	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs34494911	chr9:79151039-79151040	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs67770206	chr9:79151040-79151041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs202115426	chr9:79151052-79151053	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs200635021	chr9:79151054-79151055	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs398068673	chr9:79151059-79151060	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs112051280	chr9:79151075-79151076	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs151218776	chr9:79151082-79151083	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs193001129	chr9:79151127-79151128	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs530506779	chr9:79151133-79151134	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140409560	chr9:79151166-79151167	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs557546572	chr9:79151213-79151214	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs571026173	chr9:79151222-79151223	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs150343232	chr9:79151321-79151322	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs552061038	chr9:79151409-79151410	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs145009884	chr9:79151444-79151445	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs183631048	chr9:79151445-79151446	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs555387071	chr9:79151456-79151457	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs575324726	chr9:79151459-79151460	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs140854107	chr9:79151482-79151483	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs144669738	chr9:79151500-79151501	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs563893135	chr9:79151549-79151550	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs188913017	chr9:79151558-79151559	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs540122776	chr9:79151564-79151565	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs12552774	chr9:79151586-79151587	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs529205181	chr9:79151616-79151617	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs548998695	chr9:79151628-79151629	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs141513509	chr9:79151641-79151642	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs531386177	chr9:79151650-79151651	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs528382436	chr9:79151662-79151663	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs35167771	chr9:79151674-79151675	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs551522056	chr9:79151675-79151676	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs71354660	chr9:79151686-79151687	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs570919448	chr9:79151807-79151808	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs540005395	chr9:79151822-79151823	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs520491	chr9:79151844-79151845	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs368856194	chr9:79151864-79151865	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs10781366	chr9:79151865-79151866	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
44	rs535785027	chr9:79151925-79151926	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs143460183	chr9:79151961-79151962	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs575237486	chr9:79151967-79151968	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs117212174	chr9:79151969-79151970	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs550658051	chr9:79152000-79152001	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs558247620	chr9:79152032-79152033	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs148369196	chr9:79152048-79152049	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intellectual disability	22102821	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Melanoma	17363583	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79129200-79152000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:79134600-79152000	Weak transcription	Pancreas	Pancrea
3	chr9:79137200-79173600	Weak transcription	Primary B cells from cord blood	blood
4	chr9:79137600-79152400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:79144000-79153000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:79146000-79152000	Weak transcription	HSMMtube	muscle
7	chr9:79146800-79152000	Weak transcription	Stomach Mucosa	stomach
8	chr9:79148400-79152000	Weak transcription	HMEC	breast
9	chr9:79148400-79159800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:79148600-79159800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:79149400-79152000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:79149600-79151800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:79149600-79152400	Weak transcription	NHLF	lung
14	chr9:79149600-79153000	Weak transcription	NH-A	brain
15	chr9:79149800-79151800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:79150000-79151800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:79150000-79152000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:79150000-79152000	Weak transcription	HSMM	muscle
19	chr9:79150200-79151800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:79150200-79151800	Weak transcription	Osteobl	bone
21	chr9:79151000-79151200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:79151800-79153400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:79151800-79154200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:79151800-79154200	Enhancers	Osteobl	bone
25	chr9:79151800-79154400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:79151800-79154400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:79152000-79152200	Enhancers	HSMMtube	muscle
28	chr9:79152000-79152600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:79152000-79152600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:79152000-79152600	Enhancers	Brain Anterior Caudate	brain
31	chr9:79152000-79152600	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:79152000-79152600	Enhancers	Fetal Brain Female	brain
33	chr9:79152000-79152600	Enhancers	Fetal Muscle Trunk	muscle
34	chr9:79152000-79152600	Enhancers	Fetal Stomach	stomach
35	chr9:79152000-79152600	Enhancers	Lung	lung
36	chr9:79152000-79152600	Enhancers	Pancreas	Pancrea
37	chr9:79152000-79152600	Enhancers	Stomach Mucosa	stomach
38	chr9:79152000-79152600	Enhancers	HUVEC	blood vessel
39	chr9:79152000-79152800	Enhancers	Brain Hippocampus Middle	brain
40	chr9:79152000-79152800	Enhancers	Brain Substantia Nigra	brain
41	chr9:79152000-79152800	Enhancers	Fetal Muscle Leg	muscle
42	chr9:79152000-79153800	Enhancers	HMEC	breast
43	chr9:79152000-79154000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:79152000-79154200	Enhancers	HSMM	muscle
45	chr9:79152200-79152600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:79152200-79152600	Enhancers	Brain Cingulate Gyrus	brain
47	chr9:79152200-79152600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:79152200-79153200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:79152400-79152600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:79152400-79152800	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links