Variant report

Variant	nsv615025
Chromosome Location	chr9:105036692-105046926
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf107-5	chr9:105045829-105045892	NONHSAT133761

Extended variants
information (count: 63 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10820118	chr9:105036692-105036693	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs534937480	chr9:105036717-105036718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs189695374	chr9:105036761-105036762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs116818457	chr9:105036815-105036816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs528023047	chr9:105036819-105036820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs1923989	chr9:105036826-105036827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs542955672	chr9:105036860-105036861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs372239422	chr9:105036864-105036865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs567882027	chr9:105036873-105036874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs1923990	chr9:105036875-105036876	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs116977461	chr9:105036889-105036890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs569590600	chr9:105036900-105036901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs538249660	chr9:105036905-105036906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs541662222	chr9:105042418-105042419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs73661210	chr9:105042421-105042422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs34662479	chr9:105042440-105042441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs563032537	chr9:105042444-105042445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs532066111	chr9:105042454-105042455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs114906326	chr9:105042518-105042519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs115353380	chr9:105042578-105042579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs74665236	chr9:105042602-105042603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs529404843	chr9:105042607-105042608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs150225669	chr9:105042608-105042609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs10989951	chr9:105042624-105042625	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs192428102	chr9:105042627-105042628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs10989952	chr9:105042645-105042646	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs569825833	chr9:105042654-105042655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs538942558	chr9:105042714-105042715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs549267364	chr9:105042755-105042756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558436479	chr9:105042801-105042802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563939954	chr9:105042802-105042803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs137976318	chr9:105042865-105042866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs372168900	chr9:105042907-105042908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs10989953	chr9:105042946-105042947	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs540557662	chr9:105042953-105042954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs540285669	chr9:105042975-105042976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs76086432	chr9:105042980-105042981	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs58178571	chr9:105043031-105043032	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs542642420	chr9:105043106-105043107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs80091709	chr9:105043110-105043111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs1923994	chr9:105043157-105043158	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs10121331	chr9:105043161-105043162	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs565431323	chr9:105043171-105043172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs141762028	chr9:105043172-105043173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548050360	chr9:105043237-105043238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535856351	chr9:105043266-105043267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs184690076	chr9:105043286-105043287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116759580	chr9:105043343-105043344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549479990	chr9:105043386-105043387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569647210	chr9:105043401-105043402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105036200-105037000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:105036600-105037000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:105042400-105043000	Enhancers	Fetal Kidney	kidney
4	chr9:105043000-105043600	Weak transcription	Fetal Kidney	kidney
5	chr9:105043600-105043800	Enhancers	Fetal Kidney	kidney

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