Variant report

Variant	nsv615044
Chromosome Location	chr9:106024523-106068965
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR13C4-4	chr9:106038313-106038430	ENSG00000225564.2
2	lnc-OR13C4-4	chr9:106026806-106026932	ENSG00000225564
3	lnc-OR13C4-4	chr9:106038313-106038430	ENSG00000225564
4	lnc-OR13C4-4	chr9:106039612-106039781	ENSG00000225564
5	lnc-OR13C4-4	chr9:106038313-106038430	ENSG00000225564
6	lnc-OR13C4-4	chr9:106039612-106039781	ENSG00000225564
7	lnc-OR13C4-4	chr9:106039612-106039781	ENSG00000225564.2
8	lnc-OR13C4-4	chr9:106026893-106026930	ENSG00000225564

No data

Extended variants
information (count: 73 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565957488	chr9:106026863-106026864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs372425020	chr9:106026874-106026875	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs182501718	chr9:106026876-106026877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs187727975	chr9:106026892-106026893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559092077	chr9:106027802-106027803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs140184841	chr9:106027829-106027830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs59328304	chr9:106027869-106027870	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs80348312	chr9:106027964-106027965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs184864521	chr9:106028084-106028085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs543792266	chr9:106028107-106028108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557124986	chr9:106028136-106028137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs577248664	chr9:106028137-106028138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs76528696	chr9:106028188-106028189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs559813735	chr9:106028205-106028206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs75039602	chr9:106028234-106028235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs541628651	chr9:106028265-106028266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs369237218	chr9:106028291-106028292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs117733348	chr9:106028300-106028301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs373731450	chr9:106028321-106028322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs530760225	chr9:106028331-106028332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs9299371	chr9:106028333-106028334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs570386872	chr9:106028350-106028351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs376780828	chr9:106028351-106028352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs189281839	chr9:106028406-106028407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs114295007	chr9:106028437-106028438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs76111078	chr9:106028472-106028473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs555244779	chr9:106028494-106028495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs565497509	chr9:106028497-106028498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs138010188	chr9:106028507-106028508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs557310947	chr9:106028552-106028553	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs577129225	chr9:106028584-106028585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs527873857	chr9:106028588-106028589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs180901827	chr9:106028609-106028610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs548481540	chr9:106028610-106028611	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs371044	chr9:106028616-106028617	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs398508	chr9:106028617-106028618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs573011482	chr9:106028638-106028639	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs9776031	chr9:106028657-106028658	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs184888003	chr9:106028712-106028713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs575479458	chr9:106028743-106028744	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs538310497	chr9:106038339-106038340	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs10820409	chr9:106038352-106038353	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs577768206	chr9:106038361-106038362	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs540435762	chr9:106038386-106038387	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs554436179	chr9:106038409-106038410	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs574300036	chr9:106038416-106038417	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs576851220	chr9:106039714-106039715	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs539035321	chr9:106039717-106039718	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs199977890	chr9:106039757-106039758	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs1456480	chr9:106039763-106039764	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:106027800-106028400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr9:106027800-106028600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:106027800-106028800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:106027800-106028800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:106063200-106063600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:106066000-106066200	ZNF genes & repeats	Gastric	stomach

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