Variant report

Variant	nsv615210
Chromosome Location	chr9:115885060-115904820
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:115884874..115886487-chr9:115927190..115929312,2	K562	blood:
2	chr9:115886125..115889063-chr9:115896987..115899858,2	K562	blood:
3	chr19:13262562..13265292-chr9:115900215..115901888,2	MCF-7	breast:
4	chr9:115900227..115901850-chr9:115926488..115929015,2	MCF-7	breast:
5	chr9:115890845..115895225-chr9:115895362..115900277,5	MCF-7	breast:
6	chr9:115890845..115895225-chr9:115895362..115900277,5	MCF-7	breast:
7	chr9:115888448..115891950-chr9:115898465..115901029,3	MCF-7	breast:
8	chr9:115890546..115893506-chr9:115895057..115896950,2	K562	blood:
9	chr9:115888448..115891950-chr9:115898465..115901029,3	MCF-7	breast:
10	chr9:115873480..115874076-chr9:115899935..115900570,3	MCF-7	breast:
11	chr9:115904166..115905985-chr9:115907508..115909495,2	K562	blood:
12	chr9:115886679..115889181-chr9:115895702..115897217,2	MCF-7	breast:
13	chr9:115887611..115890231-chr9:115913519..115916345,2	MCF-7	breast:
14	chr9:115890546..115893506-chr9:115895057..115896950,2	K562	blood:
15	chr9:115904438..115911145-chr9:115911174..115916685,7	K562	blood:
16	chr9:115888226..115890685-chr9:115891498..115893833,2	MCF-7	breast:
17	chr9:115887976..115889749-chr9:115910119..115911972,2	MCF-7	breast:
18	chr9:115892442..115895400-chr9:115904212..115906056,3	MCF-7	breast:
19	chr9:115888226..115890685-chr9:115891498..115893833,2	MCF-7	breast:
20	chr9:115892442..115895400-chr9:115904212..115906056,3	MCF-7	breast:
21	chr9:115893647..115895768-chr9:115898797..115900868,2	K562	blood:
22	chr9:115884518..115887843-chr9:115899953..115901831,3	MCF-7	breast:
23	chr9:115880293..115882518-chr9:115890659..115892988,2	K562	blood:
24	chr9:115898948..115900526-chr9:115901136..115903192,2	K562	blood:
25	chr9:115886125..115889063-chr9:115896987..115899858,2	K562	blood:
26	chr9:115882399..115884999-chr9:115891613..115894561,3	MCF-7	breast:
27	chr9:115890878..115893257-chr9:115912029..115915211,3	MCF-7	breast:
28	chr9:115898948..115900526-chr9:115901136..115903192,2	K562	blood:
29	chr9:115899892..115901950-chr9:115925051..115926804,2	MCF-7	breast:
30	chr9:115893647..115895768-chr9:115898797..115900868,2	K562	blood:
31	chr9:115884518..115887843-chr9:115899953..115901831,3	MCF-7	breast:
32	chr9:115886679..115889181-chr9:115895702..115897217,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136867	chromatin interactions
ENSG00000225684	chromatin interactions
ENSG00000160888	chromatin interactions
ENSG00000267598	chromatin interactions

Extended variants
information (count: 808 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:808 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10817441	chr9:115885060-115885061	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs560777503	chr9:115885109-115885110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs80075890	chr9:115885116-115885117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs58210619	chr9:115885122-115885123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs570661366	chr9:115885148-115885149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs149538439	chr9:115885156-115885157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs73655803	chr9:115885160-115885161	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs144185341	chr9:115885184-115885185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs148271840	chr9:115885213-115885214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555299323	chr9:115885218-115885219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571946218	chr9:115885228-115885229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192313745	chr9:115885237-115885238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557545702	chr9:115885250-115885251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566420372	chr9:115885255-115885256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs142712969	chr9:115885283-115885284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs563648145	chr9:115885284-115885285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs367871045	chr9:115885291-115885292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184745421	chr9:115885300-115885301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542947143	chr9:115885407-115885408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs188798549	chr9:115885433-115885434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147348212	chr9:115885435-115885436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551881246	chr9:115885456-115885457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373184447	chr9:115885480-115885481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375880508	chr9:115885514-115885515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533177545	chr9:115885537-115885538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs139968638	chr9:115885559-115885560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562838789	chr9:115885576-115885577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs146415949	chr9:115885581-115885582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs4351482	chr9:115885583-115885584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35126978	chr9:115885584-115885585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs55898138	chr9:115885625-115885626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs551205498	chr9:115885644-115885645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569972781	chr9:115885764-115885765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529253707	chr9:115885810-115885811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs549000302	chr9:115885813-115885814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145102951	chr9:115885823-115885824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs199648219	chr9:115885827-115885828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531852449	chr9:115885845-115885846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557847730	chr9:115885867-115885868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74462890	chr9:115885888-115885889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs376387179	chr9:115885891-115885892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537250940	chr9:115885892-115885893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557177206	chr9:115885911-115885912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573885643	chr9:115885935-115885936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs181803660	chr9:115885936-115885937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553369698	chr9:115885955-115885956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568093957	chr9:115885994-115885995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs187079752	chr9:115886038-115886039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111263310	chr9:115886063-115886064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530982983	chr9:115886077-115886078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115884200-115892200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:115886600-115886800	Enhancers	Left Ventricle	heart
3	chr9:115887200-115888000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:115887200-115888400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:115887600-115888000	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:115887600-115888000	Enhancers	GM12878-XiMat	blood
7	chr9:115892000-115892600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:115892000-115893200	Enhancers	Placenta	Placenta
9	chr9:115892000-115894800	Enhancers	Brain Hippocampus Middle	brain
10	chr9:115892200-115894800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr9:115892800-115893000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:115892800-115893200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:115892800-115894800	Enhancers	Brain Substantia Nigra	brain
14	chr9:115893000-115894800	Enhancers	Brain Angular Gyrus	brain
15	chr9:115893000-115894800	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:115893000-115895000	Enhancers	Brain Anterior Caudate	brain
17	chr9:115893200-115893600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:115893200-115893600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:115893200-115897400	Weak transcription	Placenta	Placenta
20	chr9:115893600-115894400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:115893600-115894800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:115893800-115894000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
23	chr9:115893800-115894600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:115893800-115894800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:115894000-115894200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:115894000-115894600	Enhancers	Right Ventricle	heart
27	chr9:115894000-115894800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:115894000-115894800	Enhancers	Fetal Heart	heart
29	chr9:115894400-115894600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr9:115894800-115896000	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:115894800-115896200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:115894800-115896400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:115894800-115896400	Weak transcription	Brain Substantia Nigra	brain
34	chr9:115894800-115899800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:115894800-115900000	Weak transcription	Brain Angular Gyrus	brain
36	chr9:115895000-115896000	Weak transcription	Brain Anterior Caudate	brain
37	chr9:115896000-115896600	Enhancers	Brain Hippocampus Middle	brain
38	chr9:115896000-115897000	Enhancers	Brain Anterior Caudate	brain
39	chr9:115896200-115896800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr9:115896400-115897400	Enhancers	Brain Substantia Nigra	brain
41	chr9:115896400-115897600	Enhancers	Brain Cingulate Gyrus	brain
42	chr9:115896600-115897400	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:115896800-115897200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:115897000-115899000	Weak transcription	Brain Anterior Caudate	brain
45	chr9:115897200-115897400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr9:115897400-115898400	Weak transcription	Brain Substantia Nigra	brain
47	chr9:115897400-115898800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:115897400-115902800	Enhancers	Brain Hippocampus Middle	brain
49	chr9:115897400-115903000	Enhancers	Placenta	Placenta
50	chr9:115897600-115898200	Weak transcription	Brain Cingulate Gyrus	brain

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