Variant report

Variant	nsv6338
Chromosome Location	chr8:105848824-105893742
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:105892551..105895193-chr8:105962901..105965815,2	MCF-7	breast:
2	chr8:105868806..105870360-chr8:105877568..105880468,2	MCF-7	breast:
3	chr8:105890523..105892286-chr8:105897125..105898783,2	K562	blood:
4	chr8:105882407..105885255-chr8:105888462..105890627,2	K562	blood:
5	chr8:105882051..105883766-chr9:130548334..130550721,2	MCF-7	breast:
6	chr8:105882407..105885255-chr8:105888462..105890627,2	K562	blood:
7	chr8:105868806..105870360-chr8:105877568..105880468,2	MCF-7	breast:
8	chr8:105839051..105841998-chr8:105848629..105851497,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136807	chromatin interactions

Extended variants
information (count: 697 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:697 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187770613	chr8:105848835-105848836	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs546781219	chr8:105848839-105848840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs376858113	chr8:105848863-105848864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs10685644	chr8:105848877-105848878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs377588473	chr8:105848878-105848879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs376558873	chr8:105848880-105848881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs397737763	chr8:105848881-105848882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs566003383	chr8:105848931-105848932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs188369211	chr8:105863647-105863648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs181272588	chr8:105863648-105863649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs554525511	chr8:105863693-105863694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs185882546	chr8:105863702-105863703	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs56873733	chr8:105863705-105863706	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs556175266	chr8:105863758-105863759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs565239465	chr8:105863776-105863777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs551659909	chr8:105863797-105863798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs367756204	chr8:105863802-105863803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs73304974	chr8:105863854-105863855	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs189561640	chr8:105863876-105863877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs148887261	chr8:105863916-105863917	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs371929857	chr8:105863925-105863926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs566472686	chr8:105863989-105863990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs527289417	chr8:105864007-105864008	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs1020827	chr8:105864079-105864080	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs182079512	chr8:105864096-105864097	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs1020826	chr8:105864131-105864132	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs556298797	chr8:105864204-105864205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs187631579	chr8:105864266-105864267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536739573	chr8:105864274-105864275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191992962	chr8:105864279-105864280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs115632873	chr8:105864287-105864288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182863989	chr8:105864291-105864292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564868999	chr8:105864299-105864300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558791117	chr8:105864346-105864347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142594638	chr8:105864349-105864350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1020825	chr8:105864350-105864351	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs563089646	chr8:105864351-105864352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368928542	chr8:105864403-105864404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574982025	chr8:105864428-105864429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs151010853	chr8:105864481-105864482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs72677044	chr8:105864502-105864503	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs563310656	chr8:105864535-105864536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs527246933	chr8:105864569-105864570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140864975	chr8:105864578-105864579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72677045	chr8:105864674-105864675	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs531615310	chr8:105864694-105864695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs549846074	chr8:105864716-105864717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs1985150	chr8:105864737-105864738	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs113903680	chr8:105864757-105864758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548235575	chr8:105864800-105864801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Multiple myeloma	16461302	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Sezary syndrome	18413736	CNVD
Urothelial cell carcinoma	18451213	CNVD
Colorectal cancer	21645411	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	20409316	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Oral squamous cell carcinoma	21853135	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105847600-105849000	Enhancers	HMEC	breast
2	chr8:105863600-105864200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:105863800-105864000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:105864000-105868400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:105864200-105866400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:105866400-105867200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:105867200-105867800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:105867800-105870200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:105868400-105870000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:105876400-105876800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:105878400-105884400	Enhancers	Dnd41	blood
12	chr8:105878800-105879600	Enhancers	Fetal Thymus	thymus
13	chr8:105879000-105879400	Enhancers	Thymus	Thymus
14	chr8:105879400-105879800	Weak transcription	Thymus	Thymus
15	chr8:105879600-105880000	Weak transcription	Fetal Thymus	thymus
16	chr8:105879800-105880800	Enhancers	Thymus	Thymus
17	chr8:105880000-105880600	Enhancers	Fetal Thymus	thymus
18	chr8:105880200-105881400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:105880600-105883000	Weak transcription	Fetal Thymus	thymus
20	chr8:105881000-105881600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:105882800-105883800	Enhancers	Fetal Muscle Leg	muscle
22	chr8:105883000-105883200	Enhancers	Fetal Thymus	thymus
23	chr8:105884600-105885000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:105885400-105886400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr8:105885400-105886400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr8:105885600-105886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:105885600-105886400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:105885600-105886800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:105886600-105888400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:105892600-105893400	Enhancers	Thymus	Thymus
31	chr8:105893400-105894600	Weak transcription	Thymus	Thymus

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