Variant report

Variant	nsv6398
Chromosome Location	chr10:37363206-37394313
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 484 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:484 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115953311	chr10:37363652-37363653	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs544299386	chr10:37363685-37363686	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191347922	chr10:37363702-37363703	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs564182458	chr10:37363723-37363724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs548922995	chr10:37363746-37363747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569070625	chr10:37363880-37363881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185056415	chr10:37363932-37363933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs558079957	chr10:37363955-37363956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs575174813	chr10:37382406-37382407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs185817110	chr10:37382459-37382460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs555985159	chr10:37382469-37382470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557570185	chr10:37382475-37382476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577740201	chr10:37382483-37382484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540055200	chr10:37382510-37382511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192372913	chr10:37382546-37382547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569504153	chr10:37382558-37382559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183997276	chr10:37382570-37382571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542553177	chr10:37382574-37382575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1711245	chr10:37382607-37382608	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs530811783	chr10:37382622-37382623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs2486119	chr10:37382646-37382647	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs372951039	chr10:37382665-37382666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564437160	chr10:37382687-37382688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533501905	chr10:37382713-37382714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113517064	chr10:37382714-37382715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547195704	chr10:37382721-37382722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567119601	chr10:37382881-37382882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs572081393	chr10:37382882-37382883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540689428	chr10:37382891-37382892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554589693	chr10:37382910-37382911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79972212	chr10:37382965-37382966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs188983676	chr10:37382987-37382988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375371692	chr10:37382994-37382995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs1200916	chr10:37382999-37383000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372918641	chr10:37383008-37383009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143698527	chr10:37383043-37383044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564909243	chr10:37383062-37383063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557800952	chr10:37383070-37383071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs77030645	chr10:37383072-37383073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs533686167	chr10:37383079-37383080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553540404	chr10:37383109-37383110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375485381	chr10:37383129-37383130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369135923	chr10:37383180-37383181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192253889	chr10:37383244-37383245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563914873	chr10:37383256-37383257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147198811	chr10:37383257-37383258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs148672024	chr10:37383286-37383287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs575558607	chr10:37383289-37383290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs182727674	chr10:37383325-37383326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187053195	chr10:37383343-37383344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37363600-37364000	Enhancers	Colon Smooth Muscle	Colon
2	chr10:37382400-37384200	Weak transcription	A549	lung
3	chr10:37384200-37385200	Enhancers	A549	lung
4	chr10:37385200-37385600	Flanking Active TSS	A549	lung
5	chr10:37385600-37387000	Weak transcription	A549	lung
6	chr10:37387000-37387400	ZNF genes & repeats	A549	lung
7	chr10:37387400-37390000	Weak transcription	A549	lung
8	chr10:37390000-37391400	Enhancers	A549	lung
9	chr10:37390400-37391000	Enhancers	Adipose Nuclei	Adipose
10	chr10:37390600-37391000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:37391400-37396400	Weak transcription	A549	lung
12	chr10:37393400-37393600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:37393400-37393600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:37393400-37393600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:37393400-37393600	Enhancers	Esophagus	oesophagus
16	chr10:37393400-37393600	ZNF genes & repeats	Gastric	stomach
17	chr10:37393400-37393600	Bivalent Enhancer	Spleen	Spleen

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