Variant report

Variant	nsv6486
Chromosome Location	chr9:15805220-15837639
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15836820..15837651-chr9:16133566..16134324,2	MCF-7	breast:

Extended variants
information (count: 1657 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:1657 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542246624	chr9:15805225-15805226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs556586985	chr9:15805230-15805231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576745159	chr9:15805296-15805297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149289743	chr9:15805330-15805331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554516369	chr9:15805335-15805336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs572819694	chr9:15805336-15805337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2105320	chr9:15805365-15805366	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs376491141	chr9:15805404-15805405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190623416	chr9:15805445-15805446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564536365	chr9:15805464-15805465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs561347923	chr9:15805466-15805467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576560914	chr9:15805481-15805482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147013542	chr9:15805496-15805497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs202036358	chr9:15805504-15805505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs181935036	chr9:15805508-15805509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186426399	chr9:15805559-15805560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550920719	chr9:15805611-15805612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539220021	chr9:15805623-15805624	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs190791400	chr9:15805632-15805633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559707860	chr9:15805633-15805634	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs138164929	chr9:15805695-15805696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs57232765	chr9:15805710-15805711	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs533610014	chr9:15805712-15805713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373018094	chr9:15805756-15805757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567366170	chr9:15805757-15805758	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182979556	chr9:15805803-15805804	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550395553	chr9:15805839-15805840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550303308	chr9:15805855-15805856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571730888	chr9:15805858-15805859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs143421886	chr9:15805859-15805860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554258448	chr9:15805861-15805862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs572451974	chr9:15805874-15805875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188089953	chr9:15805898-15805899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563801417	chr9:15805906-15805907	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs555207585	chr9:15805964-15805965	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529391369	chr9:15805987-15805988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs543947217	chr9:15805991-15805992	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562251268	chr9:15805997-15805998	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7026629	chr9:15806006-15806007	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs191498776	chr9:15806009-15806010	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs559751683	chr9:15806079-15806080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549130690	chr9:15806090-15806091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs56323960	chr9:15806105-15806106	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs55980438	chr9:15806106-15806107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147139100	chr9:15806129-15806130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549030924	chr9:15806142-15806143	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs148648357	chr9:15806152-15806153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141195707	chr9:15806162-15806163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550042959	chr9:15806190-15806191	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571466863	chr9:15806193-15806194	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
3	chr9:15805600-15812600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15807600-15809600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr9:15807800-15810600	Weak transcription	Ovary	ovary
6	chr9:15808000-15810600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:15808600-15809800	Strong transcription	Aorta	Aorta
8	chr9:15808800-15810000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:15809800-15810600	Weak transcription	Aorta	Aorta
10	chr9:15810600-15811000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:15810600-15811000	ZNF genes & repeats	Aorta	Aorta
12	chr9:15810600-15811000	ZNF genes & repeats	Ovary	ovary
13	chr9:15810600-15811200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:15810600-15811200	ZNF genes & repeats	Pancreas	Pancrea
15	chr9:15810800-15811000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:15810800-15811000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:15810800-15811200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr9:15811000-15811600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:15811200-15815000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:15811200-15816000	Weak transcription	Pancreas	Pancrea
21	chr9:15812000-15813400	Weak transcription	Psoas Muscle	Psoas
22	chr9:15814800-15815400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:15814800-15831200	Weak transcription	Psoas Muscle	Psoas
24	chr9:15815000-15815200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr9:15815000-15815200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:15815000-15815400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:15816400-15818400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:15816800-15817200	Weak transcription	Thymus	Thymus
29	chr9:15817000-15817400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
30	chr9:15817200-15817600	ZNF genes & repeats	Thymus	Thymus
31	chr9:15824400-15825200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:15825200-15826600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:15826400-15827000	Enhancers	Brain Cingulate Gyrus	brain
34	chr9:15826400-15827000	Enhancers	Brain Hippocampus Middle	brain
35	chr9:15826600-15827000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:15827000-15834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:15828200-15828800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:15834600-15835000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:15834600-15835000	Enhancers	Fetal Lung	lung
41	chr9:15834600-15835200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:15834600-15835200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr9:15835000-15846600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:15835200-15843400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:15837000-15837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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