Variant report

Variant	nsv74
Chromosome Location	chr11:101560540-101608664
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101601852..101603833-chr11:101605803..101608471,2	MCF-7	breast:
2	chr11:101601852..101603833-chr11:101605803..101608471,2	MCF-7	breast:
3	chr11:101585641..101587293-chr11:101587607..101589983,2	K562	blood:
4	chr11:101585641..101587293-chr11:101587607..101589983,2	K562	blood:

Extended variants
information (count: 1829 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:1829 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12287382	chr11:101560585-101560586	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs536672435	chr11:101560593-101560594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569364360	chr11:101560594-101560595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs77509685	chr11:101560596-101560597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs78488243	chr11:101560597-101560598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556507469	chr11:101560605-101560606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs147843071	chr11:101560629-101560630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74793963	chr11:101560644-101560645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111340615	chr11:101560645-101560646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529760362	chr11:101560649-101560650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35717837	chr11:101560689-101560690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549740255	chr11:101560690-101560691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536504222	chr11:101560695-101560696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372778475	chr11:101560713-101560714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs149593555	chr11:101560721-101560722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12288874	chr11:101560724-101560725	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs143218957	chr11:101560779-101560780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570261283	chr11:101560790-101560791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182830513	chr11:101560795-101560796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs544632291	chr11:101560859-101560860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73588290	chr11:101560868-101560869	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs116801597	chr11:101560874-101560875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542935178	chr11:101560875-101560876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187433340	chr11:101560888-101560889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs559534522	chr11:101560943-101560944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs148294419	chr11:101560949-101560950	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141428737	chr11:101560951-101560952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551526024	chr11:101560959-101560960	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs147535120	chr11:101560976-101560977	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs530589460	chr11:101560978-101560979	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550166302	chr11:101561085-101561086	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12802694	chr11:101561112-101561113	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs536585452	chr11:101561158-101561159	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558901049	chr11:101561159-101561160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565967419	chr11:101561161-101561162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534868266	chr11:101561162-101561163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs140233975	chr11:101561173-101561174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs192928332	chr11:101561189-101561190	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs143949010	chr11:101561206-101561207	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs184618772	chr11:101561209-101561210	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544671069	chr11:101561217-101561218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555044469	chr11:101561260-101561261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs574871236	chr11:101561277-101561278	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147299908	chr11:101561285-101561286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139078270	chr11:101561287-101561288	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559411094	chr11:101561369-101561370	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12225710	chr11:101561405-101561406	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs544887296	chr11:101561446-101561447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565046605	chr11:101561448-101561449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11224960	chr11:101561479-101561480	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164920	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Intracranial ependymoma	16609018	CNVD

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101556000-101563000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:101560800-101563200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr11:101561600-101568400	Weak transcription	Ovary	ovary
4	chr11:101563200-101564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:101564400-101565000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:101564800-101565600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr11:101564800-101565600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:101564800-101565800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:101564800-101565800	Enhancers	A549	lung
10	chr11:101564800-101578400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:101565000-101565600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr11:101565600-101565800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:101575200-101575600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:101575200-101575800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:101575200-101578800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:101575400-101575600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:101575400-101576200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:101575400-101576600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:101575600-101576600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:101575800-101576000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:101575800-101576400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:101575800-101577600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:101576000-101576200	Enhancers	Esophagus	oesophagus
24	chr11:101576000-101576800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:101576000-101577000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:101576000-101577000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:101576000-101577000	Enhancers	Ovary	ovary
28	chr11:101576200-101576400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:101576200-101578400	Weak transcription	Esophagus	oesophagus
30	chr11:101576200-101578600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:101576400-101576800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:101576400-101576800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:101576600-101577000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:101576600-101577400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:101576600-101577400	Enhancers	A549	lung
36	chr11:101576600-101577600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:101576600-101577800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:101576800-101577000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:101576800-101577800	Enhancers	NHLF	lung
40	chr11:101576800-101578000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:101576800-101578000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:101576800-101578200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:101576800-101578200	Enhancers	NH-A	brain
44	chr11:101577000-101578200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:101577000-101578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:101577000-101579600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:101577400-101577800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:101577400-101577800	Flanking Active TSS	A549	lung
49	chr11:101577400-101578400	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:101577600-101577800	Enhancers	HUES6 Cell Line	embryonic stem cell

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