Variant report

Variant	nsv7670
Chromosome Location	chr11:9500895-9514750
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9334375..9337218-chr11:9507648..9509638,2	K562	blood:
2	chr11:9510455..9512586-chr11:9513778..9516603,2	K562	blood:
3	chr11:9510455..9512586-chr11:9513778..9516603,2	K562	blood:
4	chr11:9498298..9500683-chr11:9505385..9507215,2	K562	blood:
5	chr11:9496196..9499185-chr11:9501862..9504317,2	K562	blood:
6	chr11:9510653..9512629-chr11:9515570..9517732,2	MCF-7	breast:
7	chr11:9481348..9484477-chr11:9512736..9516617,4	MCF-7	breast:
8	chr11:9481104..9483094-chr11:9498453..9502182,4	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM41B-3	chr11:9514086-9514557	ENSG00000255180.1
2	lnc-TMEM41B-3	chr11:9514039-9514042	ENSG00000255180.1
3	lnc-TMEM41B-3	chr11:9511189-9511442	ENSG00000255180.1

No data

Variant related genes	Relation type
ENSG00000268403	chromatin interactions
ENSG00000166471	chromatin interactions
ENSG00000166478	chromatin interactions

Extended variants
information (count: 650 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:650 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567524850	chr11:9500922-9500923	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs564665130	chr11:9500936-9500937	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs77589451	chr11:9500940-9500941	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs188865352	chr11:9500971-9500972	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs116700480	chr11:9500977-9500978	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs374049827	chr11:9500991-9500992	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs374795083	chr11:9501015-9501016	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs137963732	chr11:9501026-9501027	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs369164452	chr11:9501041-9501042	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs201856387	chr11:9501046-9501047	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs549352456	chr11:9501048-9501049	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs373577831	chr11:9501052-9501053	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs568386955	chr11:9501053-9501054	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs530799575	chr11:9501095-9501096	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs199615633	chr11:9501096-9501097	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs181640401	chr11:9501111-9501112	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs566033500	chr11:9501198-9501199	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs552639006	chr11:9501224-9501225	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs77022684	chr11:9501268-9501269	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs11042382	chr11:9501274-9501275	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs554913074	chr11:9501298-9501299	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs555004475	chr11:9501340-9501341	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs371710723	chr11:9501354-9501355	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs184660869	chr11:9501359-9501360	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs574592706	chr11:9501401-9501402	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs558118066	chr11:9501407-9501408	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs117183046	chr11:9501435-9501436	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs540791534	chr11:9501440-9501441	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs560573028	chr11:9501467-9501468	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs10840246	chr11:9501484-9501485	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs116090405	chr11:9501500-9501501	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs576656858	chr11:9501517-9501518	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs190564906	chr11:9501545-9501546	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs34781316	chr11:9501576-9501577	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs148524864	chr11:9501621-9501622	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs570594316	chr11:9501641-9501642	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs533160071	chr11:9501661-9501662	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs367922579	chr11:9501699-9501700	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs372025580	chr11:9501718-9501719	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs118010475	chr11:9501726-9501727	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs729313	chr11:9501747-9501748	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs142818612	chr11:9501765-9501766	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs74829098	chr11:9501793-9501794	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs150602788	chr11:9501794-9501795	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs575990842	chr11:9501796-9501797	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs572756022	chr11:9501817-9501818	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs544684267	chr11:9501867-9501868	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs180694686	chr11:9501875-9501876	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs77486584	chr11:9501907-9501908	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs541464543	chr11:9501945-9501946	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Ependymoma	20639864	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:561 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9483600-9518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:9485200-9520000	Weak transcription	Stomach Mucosa	stomach
4	chr11:9489600-9524000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9489800-9523400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:9491400-9506200	Strong transcription	Liver	Liver
7	chr11:9491400-9525400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9491600-9502600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:9492000-9506000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:9492000-9527200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:9492200-9503000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:9492200-9525400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:9492600-9502800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:9492600-9505800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:9492800-9507800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:9492800-9527800	Strong transcription	Fetal Stomach	stomach
18	chr11:9493200-9503200	Strong transcription	Placenta	Placenta
19	chr11:9493200-9506600	Strong transcription	Fetal Intestine Small	intestine
20	chr11:9493400-9503000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:9495400-9503600	Strong transcription	Brain Germinal Matrix	brain
22	chr11:9495600-9525400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:9495800-9505800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:9496000-9501200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:9496200-9520000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:9496200-9522600	Weak transcription	Fetal Heart	heart
27	chr11:9496600-9507000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:9496600-9516000	Weak transcription	Fetal Brain Male	brain
29	chr11:9496600-9517000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:9496600-9528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:9496800-9503000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:9497200-9501200	Weak transcription	NHLF	lung
33	chr11:9497400-9517400	Weak transcription	Small Intestine	intestine
34	chr11:9498600-9503200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:9498600-9503400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr11:9498800-9501800	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr11:9498800-9503000	Strong transcription	Primary B cells from cord blood	blood
38	chr11:9498800-9505600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:9498800-9506200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:9499000-9501600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:9499000-9503000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:9499000-9503200	Strong transcription	Primary T cells from cord blood	blood
43	chr11:9499200-9502800	Strong transcription	Dnd41	blood
44	chr11:9499200-9503000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:9499200-9503200	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr11:9499200-9503200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:9499200-9503200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr11:9499200-9503400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:9499200-9503600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:9499200-9504800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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